Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22160 92 / 2e-24 Protein of unknown function (DUF581) (.1) AT1G78020 92 / 6e-24 Protein of unknown function (DUF581) (.1) AT4G39795 77 / 1e-18 Protein of unknown function (DUF581) (.1) AT2G44670 72 / 3e-17 Protein of unknown function (DUF581) (.1) AT4G17670 71 / 5e-16 Protein of unknown function (DUF581) (.1) AT5G47060 67 / 2e-14 Protein of unknown function (DUF581) (.1) AT1G53903 64 / 1e-13 Protein of unknown function (DUF581) (.1) AT1G53885 64 / 1e-13 Protein of unknown function (DUF581) (.1) AT5G65040 63 / 2e-13 Protein of unknown function (DUF581) (.1) AT5G49120 61 / 3e-12 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019672 [exp] 275 / 2e-96 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10019494 [exp] 63 / 3e-13 AT5G47060 95 / 8e-26 Protein of unknown function (DUF581) (.1) Lus10037493 [exp] 59 / 2e-11 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 56 / 5e-10 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10003939 [exp] 52 / 9e-09 AT1G53903 60 / 1e-11 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 50 / 1e-07 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10022073 [exp] 47 / 5e-07 AT3G63210 59 / 5e-11 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 47 / 1e-06 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 47 / 1e-06 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G078600 [exp] 96 / 4e-25 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1) Potri.007G089200 [exp] 95 / 6e-25 AT1G78020 120 / 8e-35 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 93 / 1e-24 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 90 / 1e-23 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.001G148700 [exp] 62 / 2e-12 AT4G17670 142 / 5e-44 Protein of unknown function (DUF581) (.1) Potri.003G085700 [exp] 61 / 5e-12 AT4G17670 140 / 2e-43 Protein of unknown function (DUF581) (.1) Potri.014G052900 [exp] 59 / 5e-12 AT2G44670 88 / 2e-24 Protein of unknown function (DUF581) (.1) Potri.002G140300 [exp] 58 / 2e-11 AT2G44670 85 / 3e-23 Protein of unknown function (DUF581) (.1) Potri.001G163400 [exp] 58 / 4e-11 AT1G53903 113 / 5e-33 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 57 / 2e-10 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10000693 pacid=23158781 polypeptide=Lus10000693 locus=Lus10000693.g ID=Lus10000693.BGIv1.0 annot-version=v1.0 ATGCTGTACGGAAATCGGGCACGGCCAGACATGATGAGGAGAACGACCAGCATGTCCGGAATCACCGTCGACCCTTCTCTGCCCCACCCGCCGGCGGATC TCGTCCACGGCGGCGGCAGCCGTAGTATCCAGAGGGAGCTCATGGAGAATCATTACCTGGCCAGTATGGTCTCCCCCCGGAGTAGCTTGACCGCCGCGGA GACTACGACGTCGTCTCATTTCCTTAGGACTTGCGGACTCTGCAGACACCGTATCCCTCCTTCTAACGATATTTACATGTACCGGGGAGATACGGCATTC TGTAGTCAAGAGTGTAGAGAGGAGCAAATGAAGAAAGACGAGAGAAAAGAGAGGAGATCCCAACAACGAAGCAAATTGTCCACTAGCTCTGCAGCAGCTT CCAACAGAGAAGACATTTTCATTAATGGTGGCAGCCAATACCCTTCGATTCCCACTTCCAGCATCCCCCTCTCCCCTCTTTAA
AA sequence Show only first row Show all	>Lus10000693 pacid=23158781 polypeptide=Lus10000693 locus=Lus10000693.g ID=Lus10000693.BGIv1.0 annot-version=v1.0 MLYGNRARPDMMRRTTSMSGITVDPSLPHPPADLVHGGGSRSIQRELMENHYLASMVSPRSSLTAAETTTSSHFLRTCGLCRHRIPPSNDIYMYRGDTAF CSQECREEQMKKDERKERRSQQRSKLSTSSAAASNREDIFINGGSQYPSIPTSSIPLSPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	0	1
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	3.5	0.7812
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	4.2	0.7924
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	5.0	0.7802
AT3G49720			unknown protein		Lus10039648 [exp]	8.7	0.7915
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	8.9	0.7805
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	9.5	0.7558
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	11.7	0.7703
AT1G78110			unknown protein		Lus10012052 [exp]	16.7	0.7167
AT3G51580			unknown protein		Lus10025224 [exp]	18.2	0.7367
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	20.2	0.7546

Compare expression of checked genes

Lus10000693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.