Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50650 92 / 5e-23 Stigma-specific Stig1 family protein (.1) AT1G11925 74 / 1e-16 Stigma-specific Stig1 family protein (.1) AT4G26880 70 / 5e-15 Stigma-specific Stig1 family protein (.1) AT1G53130 68 / 4e-14 GRI GRIM REAPER, Stigma-specific Stig1 family protein (.1) AT5G55110 66 / 2e-13 Stigma-specific Stig1 family protein (.1) AT1G50720 65 / 4e-13 Stigma-specific Stig1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041930 [exp] 65 / 5e-13 AT1G53130 152 / 1e-47 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10005544 [exp] 63 / 9e-13 AT1G53130 125 / 6e-38 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10012679 [exp] 62 / 4e-12 AT1G11925 104 / 3e-29 Stigma-specific Stig1 family protein (.1) Lus10020831 [exp] 62 / 8e-12 AT1G11925 100 / 7e-28 Stigma-specific Stig1 family protein (.1) Lus10043047 [exp] 59 / 7e-11 AT1G50720 133 / 3e-40 Stigma-specific Stig1 family protein (.1) Lus10011146 [exp] 57 / 3e-10 AT1G50720 125 / 2e-37 Stigma-specific Stig1 family protein (.1) Lus10006512 [exp] 56 / 9e-10 AT1G50650 71 / 5e-16 Stigma-specific Stig1 family protein (.1) Lus10011117 [exp] 56 / 2e-09 AT1G50720 117 / 6e-34 Stigma-specific Stig1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355700 [exp] 121 / 9e-35 AT1G50650 119 / 9e-35 Stigma-specific Stig1 family protein (.1) Potri.004G006900 [exp] 74 / 1e-16 AT1G11925 108 / 4e-31 Stigma-specific Stig1 family protein (.1) Potri.004G007000 [exp] 69 / 1e-14 AT1G11925 96 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.004G007100 [exp] 69 / 1e-14 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1) Potri.004G030900 [exp] 68 / 4e-14 AT1G11925 101 / 4e-28 Stigma-specific Stig1 family protein (.1) Potri.011G008932 [exp] 67 / 5e-14 AT1G11925 91 / 4e-24 Stigma-specific Stig1 family protein (.1) Potri.004G007200 [exp] 68 / 8e-14 AT1G11925 98 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.001G356600 [exp] 67 / 8e-14 AT1G50720 133 / 2e-40 Stigma-specific Stig1 family protein (.1) Potri.011G080800 [exp] 66 / 1e-13 AT1G50720 130 / 3e-39 Stigma-specific Stig1 family protein (.1) Potri.004G006800 [exp] 66 / 1e-13 AT1G11925 80 / 1e-19 Stigma-specific Stig1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04885 [flax] [poplar] Stig1 Stigma-specific protein, Stig1
Representative CDS sequence Show only first row Show all	>Lus10000696 pacid=23173742 polypeptide=Lus10000696 locus=Lus10000696.g ID=Lus10000696.BGIv1.0 annot-version=v1.0 ATGCTGGCTCCAAGAGCTTCTTCTCTTATCGCTACCTTGTTCTTTCCAATAATACTTCTCTTGTTATTTGTGCTGGCGAGTGGGGACTCACTTTCCAAAC AAGGCCACCACTATCATGCATCACCATGGCTGAACCACCACCGTCCCCGGGAGCCCGGATGCTCGAGATCTCCATGGATATGCAGAGATGAGGGTATGAA TCATCACGATCCACCTGGAAGGCGGCCGCGGATACAGTGCTGTAGAAACCAATGTGTGGATGTTTCTTCTGATATCAACAACTGTGGCTTGTGTGATATC AGATGCCCCTTCAGTTGGCTATGCTGTGGCGGATTGTGTGTAAACTCTAATGTTAGTCCTTTCAATTGTGGGAGGTGCTTTAACAGATGTCCATGGGGAG TTCAATGTGCTTTTGGTATGTGTGGATATGGTGGTCAACCACAGCCATGGCCTCGCCCTTGGCCCCAGCCACCATTTCCCTTCCCACCTCGACCTCCTGA GCCATGGCCCCGGCCACCATTTCCCTTTCCTCCTAGGCACCCCCAGCCTCCGTGTCCACCTGGTCAACATTCCCCTCCAATCTTAAAAGTTCTCAATGAT CAGTTTTTTGTTTGGAGTCGTGGGACACTCACTGTCCAAGGTGGTGAGTTAAAGCAATGA
AA sequence Show only first row Show all	>Lus10000696 pacid=23173742 polypeptide=Lus10000696 locus=Lus10000696.g ID=Lus10000696.BGIv1.0 annot-version=v1.0 MLAPRASSLIATLFFPIILLLLFVLASGDSLSKQGHHYHASPWLNHHRPREPGCSRSPWICRDEGMNHHDPPGRRPRIQCCRNQCVDVSSDINNCGLCDI RCPFSWLCCGGLCVNSNVSPFNCGRCFNRCPWGVQCAFGMCGYGGQPQPWPRPWPQPPFPFPPRPPEPWPRPPFPFPPRHPQPPCPPGQHSPPILKVLND QFFVWSRGTLTVQGGELKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50650			Stigma-specific Stig1 family p...		Lus10000696 [exp]	0	1
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10002405 [exp]	3.5	0.7671
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10040227 [exp]	9.8	0.7769
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	10.2	0.8043
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	16.1	0.7716
					Lus10017869 [exp]	20.3	0.7954
AT3G45740			hydrolase family protein / HAD...		Lus10023480 [exp]	20.9	0.7825
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	21.0	0.8018
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023317 [exp]	29.5	0.7444
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10029419 [exp]	30.0	0.6502
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10002056 [exp]	30.9	0.7805

Compare expression of checked genes

Lus10000696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.