Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55130 643 / 0 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT2G21470 93 / 5e-20 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G06460 79 / 2e-15 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT5G19180 77 / 4e-15 ECR1 E1 C-terminal related 1 (.1) AT2G30110 72 / 4e-13 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G19370 61 / 6e-10 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) AT1G05350 56 / 5e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G05180 47 / 2e-05 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G37530 47 / 3e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G32410 46 / 4e-05 AXL1, AXL AXR1- like 1, AXR1-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022510 [exp] 885 / 0 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10017479 [exp] 93 / 6e-20 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10010507 [exp] 77 / 6e-15 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10034043 [exp] 77 / 7e-15 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10028804 [exp] 73 / 3e-13 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10031862 [exp] 66 / 5e-11 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031292 [exp] 64 / 2e-10 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10015115 [exp] 61 / 2e-09 AT1G05180 860 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031562 [exp] 57 / 2e-08 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355800 [exp] 717 / 0 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.009G120200 [exp] 96 / 5e-21 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 93 / 8e-20 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.010G031900 [exp] 78 / 3e-15 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.008G204000 [exp] 77 / 7e-15 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.009G075800 [exp] 77 / 1e-14 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 77 / 1e-14 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 75 / 4e-14 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.002G229100 [exp] 60 / 2e-09 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.014G153500 [exp] 59 / 4e-09 AT1G05180 873 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10000697 pacid=23173740 polypeptide=Lus10000697 locus=Lus10000697.g ID=Lus10000697.BGIv1.0 annot-version=v1.0 ATGGAGTCTTCGAGCGGATGCCACGCCGCCAGTATTATCGCCGCAATTGAGTCCCTCAAGTCTGCCAGAAGCGACATAGACCTCCGAATTAGAGCTCTGG AGGCTCAGCTCCGCGATTTGAACCTCGAGAAACCCACCCTCTGCAGCAATGGCTCTTCTCCCTGTACTACCGTTGATTCTGCTCTCCCTCACGGATTGTC GCCTGATATGATTTACCGCTATAGCCGACACCTGCTGCTTTCTTCTTTCGGAGTTGAAGGGCAGTCAAACCTCGTCAAGTCCTCCATTTTAGTGGTCGGA GCTGGAGGTTTAGGCGCTCCGACTTTATTGTATCTTGCAGCTTCTGGCGTTGGACGGTTGGGTATAGTCGATCATGATATTGTTGAACTAAATAACATGC ACAGGCAGGTTATACACACTGAAGAATTTATTGGTCAACCGAAAGTGAAGTCCGCTGCTTCCGCCTGTCGCTCAATCAACTCCTCAATTCAGATAGTGGA ACACCAAGAAGCACTAAGAGCGTCTAATGCAATTGAAATTATGAGCCAATATGACATAGTAGTAGATGCCACGGACAATGCACCAAGCCGGTACATGATC AGTGATTGCTGTGTTGTGTTGGGGAAGCCTCTTGTGTCAGGTGCTGCATTGGGGATGGAGGGGCAGTTGACTGTCTACAATCACAACGGAGGCCCATGCT ACAGATGCCTTTTCCCAGCTCCGCCACCTACAACAGCATGCCAAAGGTGCTCTGATAATGGAGTCTTAGGAGTTGTTCCTGGAATCATAGGCTGCCTACA AGCTCTAGAAGCAATAAAAATTGCTGCAGCTGTCGGTGCGCCGCTATCAGGACGTATGCTTCTACTCGATGCATTATCAGCTCGACTTCGGATAGTCAAG ATTAGAGGCAGGGCGTCACAGTGTGAAGTATGTGGCGACAATACAACATTCACCAAAGAAGTATTTAACAAGTTTGACTACGAGAAATTCACTCAGTCGC CTCTCTCAGCGGCGCCCGTAAAGCTCAACCTCCTTGCAGCAGATTGTAGAATAACCAGCAGCGAGTTCCACAAGAAAGTTACAAATGGAGAACCATACGT TCTGATTGATGTACGTCCAGCCCACCATTTCAAGATTGTTTCTCTTCCAAATGCAATGAATATCCCTCTCCCAAGTATGGTGGTAAGATTACCGGAGATC ACAGCAGCTTTGAAAGAAGTGGAACGTAGCAGCAGCAGGGGAAATGGCCCCGAGTCAGCTGTAGACCTATACGTGATGTGTAGAAGAGGCAATGACTCGC AGAGAGCAGTTGAGTTGTTGCAGAAGATGGGGTTTCCATCTGCCAAGGATATCGTTGGTGGTTTGGAGGGCTGGGCTCGTGAGGTCGATCAGAATCTCCC CACTTACTAG
AA sequence Show only first row Show all	>Lus10000697 pacid=23173740 polypeptide=Lus10000697 locus=Lus10000697.g ID=Lus10000697.BGIv1.0 annot-version=v1.0 MESSSGCHAASIIAAIESLKSARSDIDLRIRALEAQLRDLNLEKPTLCSNGSSPCTTVDSALPHGLSPDMIYRYSRHLLLSSFGVEGQSNLVKSSILVVG AGGLGAPTLLYLAASGVGRLGIVDHDIVELNNMHRQVIHTEEFIGQPKVKSAASACRSINSSIQIVEHQEALRASNAIEIMSQYDIVVDATDNAPSRYMI SDCCVVLGKPLVSGAALGMEGQLTVYNHNGGPCYRCLFPAPPPTTACQRCSDNGVLGVVPGIIGCLQALEAIKIAAAVGAPLSGRMLLLDALSARLRIVK IRGRASQCEVCGDNTTFTKEVFNKFDYEKFTQSPLSAAPVKLNLLAADCRITSSEFHKKVTNGEPYVLIDVRPAHHFKIVSLPNAMNIPLPSMVVRLPEI TAALKEVERSSSRGNGPESAVDLYVMCRRGNDSQRAVELLQKMGFPSAKDIVGGLEGWAREVDQNLPTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10000697 [exp]	0	1
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	2.4	0.8078
AT5G20130			unknown protein		Lus10037880 [exp]	2.4	0.8026
AT5G20130			unknown protein		Lus10038580 [exp]	4.0	0.7780
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	4.5	0.7777
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10030555 [exp]	6.5	0.7963
AT3G07930			DNA glycosylase superfamily pr...		Lus10001994 [exp]	13.1	0.7355
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10038683 [exp]	14.8	0.7326
AT3G19895			RING/U-box superfamily protein...		Lus10034201 [exp]	19.1	0.7478
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032560 [exp]	23.9	0.7330
AT1G78310			VQ motif-containing protein (....		Lus10036479 [exp]	24.3	0.7401

Compare expression of checked genes

Lus10000697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.