Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33920 94 / 2e-24 Protein phosphatase 2C family protein (.1) AT3G51370 87 / 4e-22 Protein phosphatase 2C family protein (.1.2) AT3G55050 86 / 3e-21 Protein phosphatase 2C family protein (.1.2) AT3G12620 82 / 5e-20 Protein phosphatase 2C family protein (.1.2) AT5G66080 79 / 6e-19 Protein phosphatase 2C family protein (.1) AT5G06750 79 / 6e-19 Protein phosphatase 2C family protein (.1.2.3) AT3G17090 77 / 2e-18 Protein phosphatase 2C family protein (.1.2) AT5G02760 77 / 5e-18 Protein phosphatase 2C family protein (.1) AT4G38520 69 / 2e-15 Protein phosphatase 2C family protein (.1.2) AT3G16560 53 / 1e-09 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011521 [exp] 146 / 3e-44 AT4G33920 483 / 2e-171 Protein phosphatase 2C family protein (.1) Lus10019302 [exp] 145 / 6e-44 AT4G33920 472 / 4e-167 Protein phosphatase 2C family protein (.1) Lus10013896 [exp] 93 / 8e-24 AT4G33920 554 / 0.0 Protein phosphatase 2C family protein (.1) Lus10002110 [exp] 93 / 8e-24 AT4G33920 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10001976 [exp] 91 / 3e-23 AT3G12620 524 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 91 / 3e-23 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 85 / 7e-21 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 85 / 8e-21 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10015047 [exp] 82 / 9e-20 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297200 [exp] 103 / 8e-28 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G051900 [exp] 102 / 2e-27 AT4G33920 460 / 1e-162 Protein phosphatase 2C family protein (.1) Potri.009G091600 [exp] 98 / 7e-26 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.008G046900 [exp] 87 / 7e-22 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 86 / 3e-21 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 85 / 4e-21 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.016G082800 [exp] 82 / 4e-20 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 81 / 1e-19 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.005G108500 [exp] 79 / 9e-19 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 79 / 9e-19 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10000700 pacid=23155590 polypeptide=Lus10000700 locus=Lus10000700.g ID=Lus10000700.BGIv1.0 annot-version=v1.0 ATGGTGAAGCGATGGTGGATGAACCAGCCGCAGATTGCGTCCGTTGGATTTTGTTGTCTTTTAGGGATAGTGTCCAAGGATTTACTATACGTGGCGAATC TCGGCGATGCGAGGGTGGTTATGGGGAAGAGAGCTTCTCTGGCGACGGCTGCGGCAGAGCGATTGACCGTCGATCATTATGTTGCTGTTGAGGAGGCCAG AAGCAAAGTTTTGGCTCTTCATCCCGATGATACTCACATCGTCCTTATACTCGGGGTGTTTGGCGGATAA
AA sequence Show only first row Show all	>Lus10000700 pacid=23155590 polypeptide=Lus10000700 locus=Lus10000700.g ID=Lus10000700.BGIv1.0 annot-version=v1.0 MVKRWWMNQPQIASVGFCCLLGIVSKDLLYVANLGDARVVMGKRASLATAAAERLTVDHYVAVEEARSKVLALHPDDTHIVLILGVFGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	0	1
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	1.0	1.0000
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	2.0	1.0000
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	2.2	1.0000
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10017911 [exp]	2.4	1.0000
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	2.8	1.0000
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10039859 [exp]	3.0	1.0000
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	3.0	1.0000
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10040684 [exp]	3.2	1.0000
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	3.5	1.0000
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	3.6	0.9905

Compare expression of checked genes

Lus10000700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.