Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13750 1453 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 1125 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT4G26140 1082 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 1019 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 1017 / 0 BGAL4 beta-galactosidase 4 (.1) AT1G45130 997 / 0 BGAL5 beta-galactosidase 5 (.1) AT2G28470 931 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 851 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 775 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G20710 756 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037644 [exp] 1460 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 1452 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 1128 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 1112 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 1043 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10006009 [exp] 1018 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 998 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10008974 [exp] 993 / 0 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10024292 [exp] 954 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038500 [exp] 1483 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1467 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 1266 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 1158 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 1143 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 1010 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 929 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 889 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.017G057900 [exp] 868 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 862 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10000701 pacid=23155588 polypeptide=Lus10000701 locus=Lus10000701.g ID=Lus10000701.BGIv1.0 annot-version=v1.0 ATGTCCACCAATACTAATAATTTGTTCATGCTTTCATTCTTCCTTCTTGGGCTGTGCATTTGTTCTTCTTCTCCTTCTGTATCTGCTTCCGTGTCCTATG ATTCAAAGGCTGTTGTCATCAATGGGCAGAGAAGGATTCTCATTTCTGGATCCATTCATTACCCAAGAAGCACTCCCGAGATGTGGCCAGATCTCATTCA AAAAGCCCAAGAAGGAGGTCTGGATGTCATCCAGACGTACGTTTTCTGGAATGGGCACGAACCATCTCCTGGACAATATTATTTTGAGGGCAACTATGAT CTAGTCAAGTTTATTAAGCTGGTGAAGGAGGCTGGTCTTTATGTTCATCTTAGGCTTGGACCTTATATCTGTGCTGAGTGGAACTTTGGGGGATTCCCAG TTTGGCTCAAGTACATTCCTGGCATCAGTTTTAGAACCGACAATGGCCCTTTCAAGGCTGAAATGCAAAAATTTACTACAAAGATTGTCAATATGATGAA GGCAGAGAGGTTATTTGAGACCCAAGGGGGTCCAATTATTTTGTCCCAGATTGAGAATGAATATGGACCCATGGAATATGAACTTGGCGAGCCTGGTAAA GCTTACACAAAATGGGCAGCAGATATGGCGGTGGATCTTGGAACCGGTGTACCATGGATTATGTGCAAGCAAGATGATGCCCCAGACCCTATTATTAATA CTTGTAATGGCTTCTACTGCGACTACTTCTCCCCAAACAAAGAATACAAGCCAAAGATGTGGACGGAAGCCTGGACTGGCTGGTTTACAGAATTTGGTGG AGCAGTTCCCTATCGACCCGCAGAGGACATGGCTTTTGGGGTTGCAAGGTTTATACAGAAAGGAGGTTCATTCATCAATTACTATATGTATCACGGAGGG ACTAATTTTGGCCGAACTGCTGGTGGCCCTTTCATTGCAACAAGCTATGATTATGATGCTCCTCTCGACGAATATGGGCTACTGAGGCAGCCTAAGTGGG GTCATCTGAAAGATTTGCATAGAGCAATTAAGCTGTGTGAACCAGCTCTAGTGTTGGGTGATCCAACCGTGACACCACTTGGAAATTATCAAGAGGCTCA CGTCTTCAAATCAAAGTCCGGATCTTGTGCAGCTTTCCTTGCAAATTACAACCCGAAATCATTTGCAAAAGTTTCATTTGGAAGTATGCATTACAATTTG CCTCCTTGGTCTATTAGCATACTTCCCGACTGCAAGAACACTGTGTACAATACGGCAAGGGTTGGTGCTCAAACTTCAAGGATGAAGATGACTCCTGTTC CAACACATGGTGGATTCTCTTGGCAAGCATACAATGAGGAGCCGTCAGCAGAGGGTGATAAGAGTTTTAATATGGTTGGATTGCTGGAACAGATAAATAC AACCAGAGATGCTACAGACTATTTGTGGTACATGACAGATGTTAACATAGGCCCTGGCGAAAGCTCTCTCTATAATGGAAAGTATCCAGTTCTGAATGTG TTATCAGCTGGACATGCTTTGCATGTTTTTGTCAATGGTCAACTAGTAGGAACTGCTTATGGAAGTCTAGAATTTCCAAAACTGACATTCAGTCAGGGTG TGAACTTAAGGGCTGGTATCAACAAGATTGCCCTTCTGAGTATTGCTGTTGGCCTTCCAAATGTTGGTCCGCATTTTGAGACTTGGAATGCTGGGGTACT TGGGCCAGTGACATTGAATGGCCTCGATGATGGCAGGTGGGACTTGTCATGGCAGAAGTGGACATACAAGATTGGTCTCAAGGGTGAAGATATGAGTCTT CATTCGCTGAGTGGAAGTTCGTCAGTTGAATGGGCAGAAGGATCTGTAGTTTCCGAAAGGCAGCCTCTAATGTGGTACAAAACCACATTCAGTGCTCCTG CTGGGAACTCTCCGATGGCTTTAGACATGGGAAGCATGGGCAAAGGTCAGGTATGGATAAACGGACAGAGTGTTGGACGCTACTGGCCTGCATACAAGGC AGTTGGGAGCTGTGATGAATGCAGTTATGCTGGTACATATAGTGAGAAGAAATGCTTGAGCAATTGTGGAGAAGCATCACAGAGATGGTATCATGTCCCT CGATCATGGTTAAAGCCGACAGGGAATTTGTTGGTTGTATTTGAAGAATGGGGTGGAGACCCGAATGGGATCTCTGTCGTTAGAAGAGAAGTAGACAGCG TATGTGCTGATATCTACGAGTGGCAGCCAACATTGATGAATTATCATATGCAAGCATCAGAGAGAGTGAAAAAATCGCTAAGGCCAAAAGTGCACTTGTC TTGTGGCCCTGGCCAGAAAATGTCAACCATTAAGTTTGCAAGTTATGGAACACCAAAAGGGACGTGTGGGAATTACCAACAGGGGAGCTGTCATGCCTTG CACTCATACGATGCCTTCAATAGGCTTTGTGTTGGACAGAATTGGTGCTCAGTCACAGTAGCACCTGAGATGTTTGGTGGAGATCCATGCCCTGATGTGA TGAAGAAACTTGCGGTAGAGGCTATTTGCAGCTGA
AA sequence Show only first row Show all	>Lus10000701 pacid=23155588 polypeptide=Lus10000701 locus=Lus10000701.g ID=Lus10000701.BGIv1.0 annot-version=v1.0 MSTNTNNLFMLSFFLLGLCICSSSPSVSASVSYDSKAVVINGQRRILISGSIHYPRSTPEMWPDLIQKAQEGGLDVIQTYVFWNGHEPSPGQYYFEGNYD LVKFIKLVKEAGLYVHLRLGPYICAEWNFGGFPVWLKYIPGISFRTDNGPFKAEMQKFTTKIVNMMKAERLFETQGGPIILSQIENEYGPMEYELGEPGK AYTKWAADMAVDLGTGVPWIMCKQDDAPDPIINTCNGFYCDYFSPNKEYKPKMWTEAWTGWFTEFGGAVPYRPAEDMAFGVARFIQKGGSFINYYMYHGG TNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVLGDPTVTPLGNYQEAHVFKSKSGSCAAFLANYNPKSFAKVSFGSMHYNL PPWSISILPDCKNTVYNTARVGAQTSRMKMTPVPTHGGFSWQAYNEEPSAEGDKSFNMVGLLEQINTTRDATDYLWYMTDVNIGPGESSLYNGKYPVLNV LSAGHALHVFVNGQLVGTAYGSLEFPKLTFSQGVNLRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLDDGRWDLSWQKWTYKIGLKGEDMSL HSLSGSSSVEWAEGSVVSERQPLMWYKTTFSAPAGNSPMALDMGSMGKGQVWINGQSVGRYWPAYKAVGSCDECSYAGTYSEKKCLSNCGEASQRWYHVP RSWLKPTGNLLVVFEEWGGDPNGISVVRREVDSVCADIYEWQPTLMNYHMQASERVKKSLRPKVHLSCGPGQKMSTIKFASYGTPKGTCGNYQQGSCHAL HSYDAFNRLCVGQNWCSVTVAPEMFGGDPCPDVMKKLAVEAICS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10000701 [exp]	0	1
AT4G24610			unknown protein		Lus10015962 [exp]	5.0	0.8920
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10028855 [exp]	6.9	0.8408
AT1G62950			leucine-rich repeat transmembr...		Lus10007019 [exp]	7.5	0.8473
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	8.0	0.8636
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10036747 [exp]	9.0	0.8470
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	10.7	0.8588
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10016945 [exp]	13.1	0.8129
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	14.7	0.8357
AT3G07210			unknown protein		Lus10038194 [exp]	16.5	0.8316
AT3G63460		EMB2221	transducin family protein / WD...		Lus10039578 [exp]	23.0	0.8440

Compare expression of checked genes

Lus10000701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.