Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01800 54 / 6e-08 COP1-interacting protein-related (.1.2.3) AT4G00580 53 / 9e-08 COP1-interacting protein-related (.1) AT1G30060 50 / 3e-07 COP1-interacting protein-related (.1) AT2G02770 52 / 4e-07 4'-phosphopantetheinyl transferase superfamily (.1) AT4G00920 50 / 6e-07 COP1-interacting protein-related (.1) AT4G00930 51 / 9e-07 CIP4.1 COP1-interacting protein 4.1 (.1) AT5G37190 48 / 9e-06 CIP4 COP1-interacting protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006453 [exp] 243 / 2e-72 AT5G37190 85 / 3e-16 COP1-interacting protein 4 (.1) Lus10011397 [exp] 241 / 6e-72 AT4G00930 83 / 8e-16 COP1-interacting protein 4.1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052200 [exp] 78 / 1e-15 AT4G00930 95 / 2e-19 COP1-interacting protein 4.1 (.1) Potri.007G102500 [exp] 48 / 7e-06 AT1G55860 95 / 2e-20 ubiquitin-protein ligase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000702 pacid=23155591 polypeptide=Lus10000702 locus=Lus10000702.g ID=Lus10000702.BGIv1.0 annot-version=v1.0 ATGGCCGAACTGGCTATTCGGGCCGCCGTTCATGGCGGCGACCGAGCTCCCCCCCTTACCGTTTTCATCTTCACGACCCTAGATACTCATTTGGCTATGA CCTTCTCCTCCTCCGACACCGTTGCGGATCTCAAGAAGAAGATCATTGAAGAGCATCCATTGTGTTTCCCCGAGTATGGAGCGATAAAAATTGATGGGTT GAAGGATAAGGAAATCCAAGGTATTCAGAATCATGGAGATGAGGCAAACTTGAATGTTGTGAATGTTAAGAAGAATGGTTTCGATGATGAGGGTGCTGGT CTTGTTCAGAATGGTGATTGGTTAGAAACGAGAAGCGAGCCTAGTAGCTTACATAATCAGAACGGCTCCAGTGGTGCTGATGGCCTTGCTGTTGAAGTTG CTGAGACGGCTCAACTTAGTGGTGGTGTTCGTGGCGACAATGTTAAGTCCATTGTTGAGACTGACTCTCGTAGAGAGGAGGAAAGTGATGGACGAGGTCA GGATGTGGAAGTTCAAGCAATAGAAACTCAGATTGATGGCTGTGTATTGCAAGGAGGAGATTTAAATGATCTGTCTAAAAGTGATGGACAAGCTCAGGAT TTGGAAGTTCAAGTAATGGGAAATAGAATGGATGGCAGCGTATTGCAGGGAGGAGATTTGAATGAAAATTCTAATGTGAAGGAAAAACTTAAGAAGAGGA AGAGAAGCGAAAAGGGGGATGATGATGATGATGTGTTAATGAATGAATTGATGATAGGAGGGGACAAAGAGACACTAGTACTAGCACTTGCTGCACGTGG AACATCTAAAGTCCTTGAAAATGCTTCAGCTGAAGTTCAAGTGGAAGATGGCGAACCTGCTAAGGAAGAATCCAACAACGATGATTTGGTCAGTGAGCCA ACTGATCAACCATCCATGGGAGCTTCCGAACACGAGTCTGTTGCGAAGAAGGAGAGGCTAAATGAAGGGAGAACCATAGTTACAGAATATACTGAAATGA TTTTTTAG
AA sequence Show only first row Show all	>Lus10000702 pacid=23155591 polypeptide=Lus10000702 locus=Lus10000702.g ID=Lus10000702.BGIv1.0 annot-version=v1.0 MAELAIRAAVHGGDRAPPLTVFIFTTLDTHLAMTFSSSDTVADLKKKIIEEHPLCFPEYGAIKIDGLKDKEIQGIQNHGDEANLNVVNVKKNGFDDEGAG LVQNGDWLETRSEPSSLHNQNGSSGADGLAVEVAETAQLSGGVRGDNVKSIVETDSRREEESDGRGQDVEVQAIETQIDGCVLQGGDLNDLSKSDGQAQD LEVQVMGNRMDGSVLQGGDLNENSNVKEKLKKRKRSEKGDDDDDVLMNELMIGGDKETLVLALAARGTSKVLENASAEVQVEDGEPAKEESNNDDLVSEP TDQPSMGASEHESVAKKERLNEGRTIVTEYTEMIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01800			COP1-interacting protein-relat...		Lus10000702 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	3.2	0.9196
					Lus10004679 [exp]	3.9	0.8964
					Lus10021242 [exp]	4.2	0.9140
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10018256 [exp]	4.4	0.8222
					Lus10016420 [exp]	4.9	0.8840
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	7.1	0.8837
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10027553 [exp]	7.7	0.8798
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10039312 [exp]	8.9	0.8693
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	11.5	0.8788
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	11.8	0.8625

Compare expression of checked genes

Lus10000702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.