Plant FIBer expression Database

Lus10000703 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06135 36 / 0.0004 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024873
[exp]
109 / 2e-32 ND 37 / 2e-04
Lus10024872
[exp]
101 / 5e-29 ND 39 / 3e-05
Lus10014739
[exp]
71 / 5e-17 ND 40 / 2e-05
Lus10005525
[exp]
37 / 0.0004 ND 40 / 1e-05
Lus10006567
[exp]
37 / 0.0004 ND 35 / 0.001
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G221200
[exp]
48 / 2e-08 AT2G31335 / unknown protein
Potri.013G043600
[exp]
48 / 4e-08 AT1G06135 39 / 3e-05 unknown protein
Potri.002G041950
[exp]
42 / 6e-06 AT2G31335 / unknown protein
Potri.010G075100
[exp]
39 / 4e-05 ND /
Potri.019G013000
[exp]
40 / 5e-05 AT2G31335 / unknown protein
Potri.001G380300
[exp]
39 / 5e-05 AT1G06137 40 / 2e-05 unknown protein
Potri.008G163000
[exp]
37 / 0.0002 AT2G31335 40 / 1e-05 unknown protein
PFAM info
Representative CDS sequence
>Lus10000703 pacid=23144357 polypeptide=Lus10000703 locus=Lus10000703.g ID=Lus10000703.BGIv1.0 annot-version=v1.0
ATGGGTTTCGTATCTCGAAGGAAGATCATCATCTTTCTTCTGGTTCTGCTTCTTTTCTGGGCTTCGGTTTTCCAGCCTGCTGAAATGAGACCACTCAAGC
AAGAATACTATGATGATGATCCCAGTTTACTAATCCTACGACAGTCTTTGCAGAAGGGTCCGGTTGGAGGGTCGGGTCCAAACCCATGCACCAACATCGG
CGGTCGGAACCCTGGATCCTGCACCCGTGCGGCTGTTGGTGCCATGAACTTTGCCGGCAATATTGCCTCCGCCCGACCGCCGCCTCCTCCTCTAGCCGTT
GTCGCAGCTGATATATAA
AA sequence
>Lus10000703 pacid=23144357 polypeptide=Lus10000703 locus=Lus10000703.g ID=Lus10000703.BGIv1.0 annot-version=v1.0
MGFVSRRKIIIFLLVLLLFWASVFQPAEMRPLKQEYYDDDPSLLILRQSLQKGPVGGSGPNPCTNIGGRNPGSCTRAAVGAMNFAGNIASARPPPPPLAV
VAADI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G06135 unknown protein Lus10000703
[exp]
0 1
Lus10043316
[exp]
1.7 0.9945
AT2G38870 Serine protease inhibitor, pot... Lus10018786
[exp]
1.7 0.9927
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Lus10002357
[exp]
3.7 0.9938
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Lus10003148
[exp]
6.6 0.9920
AT1G17860 Kunitz family trypsin and prot... Lus10039163
[exp]
7.3 0.9877
AT5G57620 MYB ATMYB36 myb domain protein 36 (.1) Lus10039646
[exp]
9.2 0.9874
AT1G13110 CYP71B7 "cytochrome P450, family 71 su... Lus10034230
[exp]
11.4 0.9893
AT1G11925 Stigma-specific Stig1 family p... Lus10020831
[exp]
11.5 0.9864
AT4G17030 ATHEXPBETA3.1, ... expansin-like B1 (.1) Lus10030931
[exp]
11.8 0.9849
AT3G09520 ATEXO70H4 exocyst subunit exo70 family p... Lus10024438
[exp]
13.0 0.9873

Lus10000703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.