Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03030 374 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 87 / 6e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 79 / 1e-15 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 79 / 1e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 74 / 6e-14 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 73 / 1e-13 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G60570 72 / 3e-13 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G59940 69 / 2e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 65 / 4e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 64 / 2e-10 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024874 [exp] 310 / 4e-101 AT4G03030 298 / 3e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 94 / 2e-20 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013538 [exp] 92 / 2e-20 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 92 / 3e-20 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 86 / 6e-18 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10016214 [exp] 84 / 2e-17 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 78 / 8e-15 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 77 / 1e-14 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 69 / 4e-12 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041900 [exp] 444 / 8e-153 AT4G03030 400 / 7e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G221300 [exp] 431 / 3e-147 AT4G03030 496 / 9e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 97 / 1e-21 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G050600 [exp] 92 / 6e-20 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 92 / 9e-20 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 89 / 7e-19 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 88 / 1e-18 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G218400 [exp] 87 / 2e-18 AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G196900 [exp] 84 / 2e-17 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G007000 [exp] 79 / 2e-15 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10000704 pacid=23144350 polypeptide=Lus10000704 locus=Lus10000704.g ID=Lus10000704.BGIv1.0 annot-version=v1.0 ATGACTCGGTTCAGGTCAACACCGCCGGCGTCCACGATCCATCCGATCAACTCAGCTGGATCACTCATTCCCGGCTTGCCAAACGACGTGGCAGCTCAGA TACTCTCCATGCTCCCTTACTCTCACCATTCCCGCGTCAAGCCGACCTGCAAATCCTGGCACCACTTCCTCTCCTCGAAAACCCTAATTTACCTCCGCCG CCACCTCCGCCACGTGAGTCACCTCCTCTGCATATTCCCGGAGGATCCTTCGATCTCCTCCCCTTACCTATTCGATCCCCGCAGGCTCGCATGGCGGTCT CTCCCGCCCATGCCTTGCAACCCTTACGAGTACGGACTCTGCAACTTCACTTCGATATTCTTCGATCATCACCTCTACGTCCTCGGAGGGTCTCTCTTCG ACACTCGTTCTTTCCCCATGGACCGTCCTTCTCCGTCCTCCGCCACCTTCCGGTTCGATCTCCTGACTTCAACCTGGGAACAACTCTCTCCGATGCTCTC TCCTAGGGGCTCCTTCGCTTGCGTTGCGATCCCCAGCTTGGGACAGATCGTTGTCGCTGGTGGAGGGTCAAGGCACGCTTTTTTTGGCGCGGCTGGGAGC AGGATGAGCTCTGTGGAAATGTATGATGTTGCGAGGGATGAGTGGGTGGCTCTGGATGGTTTGCCTAGGTATAGAGCTGGCTGCGCGGGGTTTTTGGCCG GTGGTGCTCATGGTGAGGAGATGAATTTCTGGGTGATGGGAGGGTATGGTGAGTCGAGGACGATTTCAGGTGTGTTCCCTGTGGATGAGTATTATAAGGA TGCGGTGGTGATGGAGGTGAATAAGTACGGGACTGAGAAGTGGAAAGAGGTTGGGGATATGTGGCAGGAAGGGGAAAGAGCGAGGCTTGGGAAGGTTGTA GCCATTGAGGAGGATGATAATGGTTCTTCCCCTGCTGTTTTCATGCTTGATAATAATGATATTTTCAGAAATTGGGGTTTTGGAGGAAAACCTCATCGTT TAAACATGAACAGCTCGGGAGTGAACTATGCAGAGCTCGGGAGTGAACTATGCAGAAAGAAAATTGATTTACATCGCAGCATCCACAAAGTCCTGCTACC AAAACACTTCACTCCCTATGAAGCTAAGATTGTCCTGTCCGATTTGTGGTACCAACCAAAAGTACAGCTAGAAATTTTCGACATAAGTCATGTAGAATTA GATATGTTCTCGACTTCCTTCCCTTGCTTCAGATTAAGAAAATGGCTTCAAACTCTTCAATTTCATGTGAAGCTTGTGAGTAGCTCTGTTAACTTACTTC TGGAAAACTTAATCTGGGAATTGAAGCAGATAGATGTTCTGTATATCTTTCAGAAGCATGGTAGATTGGATCAGTTCTTACATTTTAGCAATAAGAATGT TGCTTTCGTGGCCATAGAAGCTGCTGAACATGAACTACAAAGTTCTCTGCTGGATATTTCCTTGAACTTCATATGGGCATTCATGATTTTTCTCTATTAT TATAGGTATGACATGACTTTCAACCGTTGGCACAAAGAAGCCAGCGTACCAAGAAAAGCACCTCGGGAGTCTTCATATGGGTTCTTAGTGTTGGACGGTG AGCTACATGTAATGACTGCCGTCAAATGCTCCGATGTATCACGAACAACAAGACAGCAAAAGAGGGCAGGGTTCTTTTTCGTCCAAATCTACAGCCCGAG GAATAAGACTTGGAGGTCATTGCTCTCAAAGCCGCCATTCCAGTCCCCACTGGATTTCAACACTGCTGTTATGTGCTCAATTCAAATTTAG
AA sequence Show only first row Show all	>Lus10000704 pacid=23144350 polypeptide=Lus10000704 locus=Lus10000704.g ID=Lus10000704.BGIv1.0 annot-version=v1.0 MTRFRSTPPASTIHPINSAGSLIPGLPNDVAAQILSMLPYSHHSRVKPTCKSWHHFLSSKTLIYLRRHLRHVSHLLCIFPEDPSISSPYLFDPRRLAWRS LPPMPCNPYEYGLCNFTSIFFDHHLYVLGGSLFDTRSFPMDRPSPSSATFRFDLLTSTWEQLSPMLSPRGSFACVAIPSLGQIVVAGGGSRHAFFGAAGS RMSSVEMYDVARDEWVALDGLPRYRAGCAGFLAGGAHGEEMNFWVMGGYGESRTISGVFPVDEYYKDAVVMEVNKYGTEKWKEVGDMWQEGERARLGKVV AIEEDDNGSSPAVFMLDNNDIFRNWGFGGKPHRLNMNSSGVNYAELGSELCRKKIDLHRSIHKVLLPKHFTPYEAKIVLSDLWYQPKVQLEIFDISHVEL DMFSTSFPCFRLRKWLQTLQFHVKLVSSSVNLLLENLIWELKQIDVLYIFQKHGRLDQFLHFSNKNVAFVAIEAAEHELQSSLLDISLNFIWAFMIFLYY YRYDMTFNRWHKEASVPRKAPRESSYGFLVLDGELHVMTAVKCSDVSRTTRQQKRAGFFFVQIYSPRNKTWRSLLSKPPFQSPLDFNTAVMCSIQI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	0	1
AT2G46620			P-loop containing nucleoside t...		Lus10035073 [exp]	1.4	0.8660
AT4G32250			Protein kinase superfamily pro...		Lus10002923 [exp]	2.0	0.8815
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	5.2	0.8293
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	6.0	0.8186
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	8.0	0.8563
AT4G19670			RING/U-box superfamily protein...		Lus10038341 [exp]	8.4	0.8414
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	9.5	0.8656
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	11.2	0.7957
AT2G46550			unknown protein		Lus10005973 [exp]	12.3	0.8307
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10019687 [exp]	13.6	0.7994

Compare expression of checked genes

Lus10000704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.