Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37740 59 / 9e-11 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT3G23130 57 / 2e-10 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 57 / 3e-10 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 57 / 3e-10 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT3G53820 56 / 4e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G09290 56 / 8e-10 C2H2ZnF TAC1 telomerase activator1 (.1) AT5G06070 56 / 1e-09 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G43540 49 / 2e-07 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G27880 46 / 4e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 45 / 4e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024875 [exp] 145 / 9e-45 AT2G37740 64 / 6e-13 zinc-finger protein 10 (.1) Lus10004705 [exp] 58 / 1e-10 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1) Lus10021490 [exp] 58 / 3e-10 AT2G37740 103 / 1e-25 zinc-finger protein 10 (.1) Lus10024362 [exp] 58 / 3e-10 AT2G37740 105 / 4e-27 zinc-finger protein 10 (.1) Lus10010871 [exp] 57 / 4e-10 AT2G37740 103 / 9e-26 zinc-finger protein 10 (.1) Lus10030967 [exp] 57 / 5e-10 AT4G17810 112 / 1e-30 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10022206 [exp] 57 / 7e-10 AT3G23130 100 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040083 [exp] 56 / 8e-10 AT4G17810 123 / 8e-35 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021215 [exp] 57 / 9e-10 AT3G23130 102 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041700 [exp] 60 / 3e-11 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.001G142900 [exp] 58 / 1e-10 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G091200 [exp] 58 / 2e-10 AT4G17810 140 / 2e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G037100 [exp] 57 / 2e-10 AT3G53820 74 / 5e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089600 [exp] 58 / 3e-10 AT2G37740 102 / 2e-25 zinc-finger protein 10 (.1) Potri.008G163900 [exp] 57 / 3e-10 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G101400 [exp] 57 / 4e-10 AT2G37740 108 / 3e-27 zinc-finger protein 10 (.1) Potri.016G101300 [exp] 56 / 4e-10 AT3G53820 92 / 2e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089301 [exp] 56 / 5e-10 AT3G53820 96 / 1e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G059000 [exp] 56 / 1e-09 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000705 pacid=23144355 polypeptide=Lus10000705 locus=Lus10000705.g ID=Lus10000705.BGIv1.0 annot-version=v1.0 ATGGAGAAGACATGCAGGACCAGAACCAAATCCCGGGATCATCATCATCCTCCTCACGCCCACCGGTCACGGTACGTGTGCAACTTCTGCAGGAAAGACT TCAGCTCGGCACAGGCACTCGGCGGCCACATGAACGTCCACCGCCTAGACCGGGCCCGCCTCCTCCTCATCGGACCTTCTTCTTCTTCTTCTTCTTCATC ATCATCATCACCATCTCACCTCTCTCCACCGTCCGATTCGCTGCACGGCATTACTGAACATGATGATAAGGAGCAGTACCGTCGTCGTCGTCCAAGTACA TTAATGGCTTCCCCTTATCCTACCAACTTGCAGCTCACCACCTTCTTCCCTAGTCATCGTGAGTCCGTACTGTTAATGGCGTCACATAAGTTAAAGATGG AGTTGGCTGAAGATCAAGATCAAGATCAGCAGGACCAAGTTGTTAGGTTGGAGTTGGGAATGGAAGGAGCAGCAGCAGCTCCCAAACCAGCACTGGATTT GGAGCTCCGACTCGGCTGCTTCACCTCCATTTAA
AA sequence Show only first row Show all	>Lus10000705 pacid=23144355 polypeptide=Lus10000705 locus=Lus10000705.g ID=Lus10000705.BGIv1.0 annot-version=v1.0 MEKTCRTRTKSRDHHHPPHAHRSRYVCNFCRKDFSSAQALGGHMNVHRLDRARLLLIGPSSSSSSSSSSSPSHLSPPSDSLHGITEHDDKEQYRRRRPST LMASPYPTNLQLTTFFPSHRESVLLMASHKLKMELAEDQDQDQQDQVVRLELGMEGAAAAPKPALDLELRLGCFTSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	0	1
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10028480 [exp]	1.4	0.9290
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10018598 [exp]	1.4	0.9300
AT2G25625			unknown protein		Lus10013129 [exp]	3.0	0.9213
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	5.5	0.8831
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	6.0	0.8966
AT2G39650			Protein of unknown function (D...		Lus10020938 [exp]	6.9	0.8620
					Lus10003411 [exp]	11.0	0.8761
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	12.0	0.8905
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10023553 [exp]	13.0	0.8613
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10040791 [exp]	13.3	0.8756

Compare expression of checked genes

Lus10000705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.