Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12770 857 / 0 MEF22 mitochondrial editing factor 22 (.1) AT4G30700 521 / 6e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 500 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 502 / 2e-167 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 496 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 499 / 2e-165 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 495 / 7e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 495 / 1e-163 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 469 / 1e-154 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 472 / 6e-154 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024876 [exp] 1587 / 0 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10029436 [exp] 516 / 1e-173 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 503 / 2e-166 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035815 [exp] 501 / 5e-166 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 479 / 4e-159 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 483 / 9e-159 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 475 / 1e-156 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 481 / 2e-156 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 473 / 3e-156 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152000 [exp] 1000 / 0 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.006G181800 [exp] 524 / 4e-175 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 515 / 3e-172 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 510 / 3e-171 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 507 / 4e-170 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 507 / 4e-170 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 510 / 1e-169 AT3G22690 582 / 0.0 unknown protein Potri.018G071800 [exp] 506 / 3e-169 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 501 / 6e-168 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 508 / 9e-167 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0020 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10000706 pacid=23144358 polypeptide=Lus10000706 locus=Lus10000706.g ID=Lus10000706.BGIv1.0 annot-version=v1.0 ATGTCTCTAAGCCTTTCCTCTACAAGATTTGTCTCTCTTGTCCGACTTCCTGCAAATTGGCAATCTTTTAATGTTGGGATCTTTGAATTTCCCTCCTCAC TTGTTGGATTCGCTAGAAAAAAGTCCTCGCTTTCTCTCAGTATAAATAAGGGAAACCAGGAACGGTTTCATGCTTTTGTTTCCGATGCCGGTTACACGCA TCTCATTGAGAATGCAGCTAACAGAAACCATTTAAATCAGATACACACTCAATTGATGGTCTTCGGGTTACAGTGTCATGGGTTCTTGGTTACCAAATTT GTTAATGCGTGTACACGTCTTGGAGAAATGAATTGTGCACGTGAAATTTTTGATGGTTTTCCTGTCCCGGATGTGTTTCTATGGAATGCGATTATAAGGT GTTATTCGAGGCATAATTTGTTCCGTGATGCCGTTACCATGTATGGTAGGATGCAATTGGTATGGGCCAATCCTGACAGCTTTACCTTCACCTGTGTTCT TAAGGCTTGTAGTGGATTGCCAGCACTTGAAATGGGTCGGCGGATACAGGGCCAGATATTTAGGCGTGGGTTTGATTCCGACAGTTTTGTGCAGAATGGT CTTATTACATTTTATGCAAAATGCGGGGAGATTGAGCTGGCTAACAAGGTTTTTGGGAGGTTGTCTGATAAGACTATTGTCACTTGGACTTCAATGATAT CTGGGTATGCACAGAATGGGAAGCCCCTTGAAGCTCTTAGAGTTTATAGCCAAATGAGGAATACTAATTTGAAACCCGAGTGGATAACGTTTGTGAGTGT TCTTAAGGCGTACACCGATATAGAAGGATTGGAAGGAGGAAAATGTATTCATGGCTGTGCTATTAAAATGGGATTTGAGTTGGAACCTGATTTAGTTATT GCACTCACTGCATTATATGCAAAATGCGGGCAGGTGGAATATCCAAACTTAGTATTGTGGAATGCTATGATTTCTGGTTATGCAAAGAATGGCCATGCAG GAGAAGCTGTTGAATTATTCCGTAGGATGGTGAATAAGAAAGTTGGGCCTGATTCAATATCGGTAACCTCTAGTATCTCTGCTTGTGGCCAAGTGGGTTC CATGGAGTTAGCAAGATGGATGGACGAATATGTAGCAAACAGTGAGTTCAAAGCTGACGTTGTTGTTAACACATCACTGATTGATATGTATGCAAAGTGT GGAAGTGTCAACTCTTCTCGCAATGTTTTCAATAGAACAGGAGAAAAGGATGTAGTCATGTGGAGTGCGATGATAGCTGCATATGCCTTGCATGGTCAAG GTCAAGAAGCAATTGATCTCTTCACTGCAATGAGATACGCTGGGGTGCAGCCTAATGATGTTACCTTTGTCAGCCTCCTTTCAGCATGCAACCATTCGGG TCTTGTAGAAGAAGGATGGAAACTTTTCCACTGTATGAGAGAATATGGAATTGAACCACGCCACCAGCATTATGCTTGCGTGGTTGATCTTCTTGGACGG GCAGGCTATCTAGACAGAGCTTATGAGTTTATTAGGAATATGCCAATTGAGCCAGGTGTCAGTGTGTGGGGAGCTCTTCTGACTGCATGCAAGATCCATC GACATGTCACTCTGGGAGAATATGCTGCTGAACGCCTTTTCTCCATAGACCAGTACAGTACCGGGCATCACGTCCAGTTGTCCAACATCTATGCTTCAGC TCGTATGTGGGATCATGTCTCAAAGATGCGAGTTCTGATGAAGGAGAAAGGCCTGAGTAAAGACCTTGGATATAGTTCAATAGAAATTAATGGAAAACCA CAAGTATTTCAAGTCGGTGATAAGTCTCATCCAAGGTTCACAGAGATACTTGAGAAACTTGTGAGTTTAGAGAGGAGATTGAAGGAGCTTGGATTTTTCA CTGATACAGAATCTGTCCTTCATGATTTGAATGACGAAGAAATAGAAGAGACTCTTTGTAATCATAGTGAAAGGATAGCAATTGCTTATGGGCTAATATG TACTCCCCCTGGAACGACTCTTAGGATAATAAAGAATCTCCGGGCATGTGTAAACTGCCATGCAGCAATCAAGCTTATATCAAAGATTGAAAATCGAGAA ATTATTGTAAGGGATTCGAATCGTTTTCATCACTTCAAGGATGGAAAATGTTCTTGTGGGGATTATTGGGATATCAGGAACAACAGGACTGCTCTCTTCG ATGGCATAGAGGAGGGTGGCATCAGAGCTTCTTCTTCTTACTCCCATGAAATTAACGAGCAAGCCAATGAAAGTGCCCTTGAAGGGTTACAGGACAGAGT CAATCTGCTGAAGCGGCTGTCGGGTGATATCCACGAAGAGGTGGAGGGGCATAATCGCATGCTGGATGGAATGGGCAATGATATGGATTCATCAAGAGGA GTCCTTTCAGGAACAATGGATCGTTTCAAAATGGTATGCGTTCTCGATTAG
AA sequence Show only first row Show all	>Lus10000706 pacid=23144358 polypeptide=Lus10000706 locus=Lus10000706.g ID=Lus10000706.BGIv1.0 annot-version=v1.0 MSLSLSSTRFVSLVRLPANWQSFNVGIFEFPSSLVGFARKKSSLSLSINKGNQERFHAFVSDAGYTHLIENAANRNHLNQIHTQLMVFGLQCHGFLVTKF VNACTRLGEMNCAREIFDGFPVPDVFLWNAIIRCYSRHNLFRDAVTMYGRMQLVWANPDSFTFTCVLKACSGLPALEMGRRIQGQIFRRGFDSDSFVQNG LITFYAKCGEIELANKVFGRLSDKTIVTWTSMISGYAQNGKPLEALRVYSQMRNTNLKPEWITFVSVLKAYTDIEGLEGGKCIHGCAIKMGFELEPDLVI ALTALYAKCGQVEYPNLVLWNAMISGYAKNGHAGEAVELFRRMVNKKVGPDSISVTSSISACGQVGSMELARWMDEYVANSEFKADVVVNTSLIDMYAKC GSVNSSRNVFNRTGEKDVVMWSAMIAAYALHGQGQEAIDLFTAMRYAGVQPNDVTFVSLLSACNHSGLVEEGWKLFHCMREYGIEPRHQHYACVVDLLGR AGYLDRAYEFIRNMPIEPGVSVWGALLTACKIHRHVTLGEYAAERLFSIDQYSTGHHVQLSNIYASARMWDHVSKMRVLMKEKGLSKDLGYSSIEINGKP QVFQVGDKSHPRFTEILEKLVSLERRLKELGFFTDTESVLHDLNDEEIEETLCNHSERIAIAYGLICTPPGTTLRIIKNLRACVNCHAAIKLISKIENRE IIVRDSNRFHHFKDGKCSCGDYWDIRNNRTALFDGIEEGGIRASSSYSHEINEQANESALEGLQDRVNLLKRLSGDIHEEVEGHNRMLDGMGNDMDSSRG VLSGTMDRFKMVCVLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10000706 [exp]	0	1
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10009122 [exp]	4.0	0.7926
AT5G23490			unknown protein		Lus10019229 [exp]	5.0	0.8243
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	6.6	0.8197
AT1G71820		SEC6	SEC6 (.1.2)		Lus10026982 [exp]	7.1	0.7945
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10016989 [exp]	7.7	0.7839
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10021310 [exp]	9.5	0.7576
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	15.7	0.7875
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10019611 [exp]	20.0	0.7186
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	24.6	0.7638
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	24.7	0.7458

Compare expression of checked genes

Lus10000706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.