Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42430 205 / 8e-66 AS2 ASL18, LBD16 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) AT3G58190 173 / 1e-53 AS2 LBD29, ASL16 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) AT4G00210 160 / 1e-48 AS2 LBD31 LOB domain-containing protein 31 (.1) AT3G03760 159 / 1e-47 AS2 LBD20 LOB domain-containing protein 20 (.1) AT2G42440 157 / 2e-47 AS2 Lateral organ boundaries (LOB) domain family protein (.1) AT2G45420 157 / 1e-46 AS2 LBD18, ASL20 LOB domain-containing protein 18 (.1) AT5G06080 148 / 2e-44 AS2 LBD33 LOB domain-containing protein 33 (.1) AT2G31310 148 / 3e-44 AS2 LBD14 LOB domain-containing protein 14 (.1) AT2G45410 147 / 8e-44 AS2 LBD19 LOB domain-containing protein 19 (.1) AT4G00220 145 / 9e-43 AS2 JLO, LBD30, ASL19 LOB DOMAIN-CONTAINING PROTEIN 30, JAGGED LATERAL ORGANS, Lateral organ boundaries (LOB) domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024877 [exp] 416 / 2e-148 AT2G42430 211 / 6e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10014757 [exp] 248 / 1e-82 AT2G42430 208 / 2e-67 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10033872 [exp] 247 / 3e-82 AT2G42430 212 / 6e-69 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10033873 [exp] 174 / 9e-54 AT3G58190 220 / 1e-72 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10000613 [exp] 171 / 9e-53 AT3G58190 215 / 1e-70 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10009298 [exp] 142 / 1e-41 AT2G45410 193 / 2e-62 LOB domain-containing protein 19 (.1) Lus10004707 [exp] 140 / 4e-41 AT5G06080 154 / 1e-47 LOB domain-containing protein 33 (.1) Lus10016769 [exp] 129 / 6e-36 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10022463 [exp] 129 / 1e-35 AT5G66870 221 / 8e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G221900 [exp] 238 / 4e-79 AT2G42430 209 / 3e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.002G041200 [exp] 233 / 5e-77 AT2G42430 191 / 6e-61 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.002G041100 [exp] 171 / 8e-53 AT2G42440 186 / 6e-59 Lateral organ boundaries (LOB) domain family protein (.1) Potri.002G149000 [exp] 166 / 2e-50 AT2G45420 234 / 2e-77 LOB domain-containing protein 18 (.1) Potri.010G200400 [exp] 162 / 3e-49 AT5G06080 152 / 8e-47 LOB domain-containing protein 33 (.1) Potri.014G070400 [exp] 162 / 3e-49 AT2G45420 237 / 2e-78 LOB domain-containing protein 18 (.1) Potri.013G064501 [exp] 162 / 3e-49 AT3G03760 209 / 1e-67 LOB domain-containing protein 20 (.1) Potri.014G070300 [exp] 145 / 2e-43 AT4G00210 181 / 5e-58 LOB domain-containing protein 31 (.1) Potri.002G148900 [exp] 141 / 2e-41 AT4G00210 186 / 2e-59 LOB domain-containing protein 31 (.1) Potri.005G097800 [exp] 127 / 8e-37 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10000707 pacid=23144351 polypeptide=Lus10000707 locus=Lus10000707.g ID=Lus10000707.BGIv1.0 annot-version=v1.0 ATGGCATCTTCCGGCAGTGGAACCAGTTCCAGCGGCGGCGGGGGAGGAGCGGGGACGCCGTGCGGGGCGTGCAAGTTCCTCCGCAGGAAATGCGCGGCGG ACTGCGTCTTCACACCTTACTTCTGCTCCGAACAGGGGCCCGCACGATTCGCCGCCATTCACAAGGTGTTCGGAGCTAGCAACGTCTCCAAGCTCCTCCT CCACCTCCCGGCTGCCAACCGCAGCGAGGCGGTCGTCACCATCTCGTATGAAGCTCAGGCTAGGCTCCGGGACCCTGTCTACGGCTGCGTCGCCCATGTC TTCGCCCTCCAACACCAGGTGGCATACTTGCAAGCGCAAATAATGCAAATGAAAGCCCAGCTGGCGCAGAATAGTAACTACGTCATGGACTCGCCGCGTA ATAACAATAATGCCACGACCAGTCCGTACAGTTCATGGCAAGAAAACAACCACAACTGTACTACTTGTACCACCACTACTACTACAACTGGTACAGTCCC ATCGGCAGAATGGGGAGCTGCAGTACCAGCAGTAGCTACCAACTATTGCTACAGTTTCAACCCGCCGCCAAATACTGTATCGCCACAGAGCTCCCCTGAA TCCGTCGACTACAGCGGCCGCGGAGGCGGGACGGCGGCGCCGGAGGATTACTATTATTTGACGCAACAGAATATTAAGTACAGAGATCAGGAAGCTCCAG CATTAATGTTTGGTCAGCCGAAGACGACGAGGAAAAGACCGTACAATAACGAGCTTGGTGACCTTCAAGCTCTGGCTCTTAAGATGATGGGCAACTGA
AA sequence Show only first row Show all	>Lus10000707 pacid=23144351 polypeptide=Lus10000707 locus=Lus10000707.g ID=Lus10000707.BGIv1.0 annot-version=v1.0 MASSGSGTSSSGGGGGAGTPCGACKFLRRKCAADCVFTPYFCSEQGPARFAAIHKVFGASNVSKLLLHLPAANRSEAVVTISYEAQARLRDPVYGCVAHV FALQHQVAYLQAQIMQMKAQLAQNSNYVMDSPRNNNNATTSPYSSWQENNHNCTTCTTTTTTTGTVPSAEWGAAVPAVATNYCYSFNPPPNTVSPQSSPE SVDYSGRGGGTAAPEDYYYLTQQNIKYRDQEAPALMFGQPKTTRKRPYNNELGDLQALALKMMGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Lus10000707 [exp]	0	1
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10004881 [exp]	40.4	0.6049
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	45.8	0.5991
AT5G12170		CLT3	CRT (chloroquine-resistance tr...		Lus10000891 [exp]	60.1	0.5843
AT3G60730			Plant invertase/pectin methyle...		Lus10009287 [exp]	99.4	0.5176
					Lus10021794 [exp]	272.2	0.5075

Compare expression of checked genes

Lus10000707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.