Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42450 612 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT2G31270 228 / 4e-64 ATCDT1A, CDT1A, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) AT3G54710 155 / 8e-40 ATCDT1B, CDT1B, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1) AT4G16070 105 / 7e-23 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT3G14075 97 / 3e-20 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT1G05790 82 / 6e-16 lipase class 3 family protein (.1.2) AT4G00500 74 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G37710 64 / 4e-10 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 63 / 5e-10 alpha/beta-Hydrolases superfamily protein (.1) AT3G14360 44 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024878 [exp] 1045 / 0 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10024879 [exp] 719 / 0 AT2G31270 292 / 7e-93 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Lus10040505 [exp] 144 / 5e-36 AT3G54710 171 / 5e-47 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1) Lus10015680 [exp] 112 / 4e-25 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10013158 [exp] 109 / 3e-24 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 108 / 5e-24 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037710 [exp] 102 / 7e-22 AT4G16070 764 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10016834 [exp] 101 / 1e-21 AT4G16070 750 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10011306 [exp] 84 / 2e-16 AT3G54710 110 / 2e-25 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222000 [exp] 677 / 0 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G222700 [exp] 318 / 1e-96 AT2G31270 357 / 3e-116 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Potri.002G040100 [exp] 224 / 8e-63 AT2G31270 339 / 1e-109 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Potri.002G041000 [exp] 130 / 1e-34 AT2G42450 139 / 5e-39 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G067700 [exp] 116 / 9e-27 AT2G31270 115 / 8e-27 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Potri.003G067900 [exp] 102 / 6e-22 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 100 / 2e-21 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 94 / 2e-19 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.014G150800 [exp] 75 / 2e-13 AT1G05790 622 / 0.0 lipase class 3 family protein (.1.2) Potri.002G159200 [exp] 72 / 6e-13 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF08839 [flax] [poplar] CDT1 DNA replication factor CDT1 like CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10000708 pacid=23144354 polypeptide=Lus10000708 locus=Lus10000708.g ID=Lus10000708.BGIv1.0 annot-version=v1.0 ATGAAAACCGAGAAGAAGCCTTACTCCACCCGCTCTTCTCCAGCATCGTCATCAACTCCATCAAAACCCTGCAAACCACCTCTCCACCCCAATTCCACTT CCAAATCCAAGCAACCCACAAATCCCTTTGCCGCACAGGCCACCGCCCAGCCTCCATCGGCCACCGCAGCCTGCCGCCGCCTCCGAAACCGCAATGTCGC CCTGTCGCTGAACGAAGTAAAAAAGGCTGCCACCACCACTAGTGCACCGCCGACGCCGCACCAGCCTAATAAGAGCGCCGCCAAATCTACCCGCAGGCGA AAACTTTCCTGGCCCGATGCACCGTCTCCGTCCGTCTCGAAACAAGGAGGATCCGGTGGCGACGGAATTAATAATAAGCTTCCTGAAAAGTACGAGATGC TGATTGAGTTCTTCAATTGCTTAGATAATTCGGTTCGTCTGCTGAAGATGAAGGGCTCTTCCTCTACCTTTCCCAACATTTTCCGTATAATCGAATCCCT AAGCACCAGGAGATTCTCTCATGGAAATTTGGCGCAATTGAAGTATATACTACCGGAGGCAATCGAGATAAAGAAGGTGATGAAGTTCGACGAAAGAACT AGCTGTATGAAGCCTGATCTCCATGTTTCAGTCAACGCTGATGCTATTGAGGTTGACGATGAAACGAAATCCTCAGAGGGAAAGCATTCGAGTTTGAGGA ATGTTTTCCGCAAACGTTTGGAGAAATTCTGCCAATCCCACCCTGAGGGTGATGAAGTTCCTGAAGAGATGTTGCCTGAGCCATTCAATTATGTTAAATC TGATATGGTTTCAGAAAAGCCTCAATCAGTCAATGGAGAGTCTTCACCCGGAACTCCATTTGCCACCGAGAACGAAGCACTTGAGTCGCTTTGGCCAGCT GCAGCTTCTCATCTTTCAAGCTCTTTCAGGAGGTCCTTCTCCACGAAGAGGAAACTGGAAGGGAAATTATTAGAGGATAATCCATCTTTCCCTCAGCCTG TGTTGCCATTCTCCGAGCCTTCATTGGCCTCCGATAGAGATACCGATTCACCGGCTATTGCAATTGCTACCGCTGCTTGCATACCTCAATCTCCTGCGAA GAAGATGGAGGTTGACAGTAGCTCACTGCAGTCAACTCCAGCGAGAGTTGTGTTGACTCCAACTAAGTTAATGTCAGTTACACCTGCACAATGCAAGCAA AAGAGAAGCTCGACTACTATGACTCCTGATGGTGGCTCTAACAGTTCGCCAAACAAGCTGGTGAGGCGATTACCAGTTAATGATGATGATGATGATCTTC CCGAGAGTCTTCTCGATTCGATAAGGGAGAAACAGAGAAAGGCTGATGAGGAGAAGGATCCGGCTATCTCGCAAGCAAAGAGGCGGCGAAAGATGATTGC CAGTTCGCCTAAGCTATTCGACACTATCCGTTTCTTGTTTCAGTCGATAAACCGATCGGTTATCACCAAGGAGGAACTAATTCATAAGATTCTTGCTGGT CAATTGGGTATTGCTGACAGAAGAGAAATAGAAGAACGACTGAACTTGCTGGAGGAGGTACTTCCAGAATGGATCTCTGAGAAGAAAGCTCTGAGTGGCG ATTTGCTCTGCTGGTACTTTTTGGCGAGGCAAGAAGCCTACCGGAGGCTAGCCGGCCACGTTCTGCGGCGGTGGCAATCGCGAACTCCCGGAGACACTTA CCTGGAATCAACGGGGAAGTTGGATTCAAAGCGCAATGGCGGGGATGAGGATGATAGCTCGAATAAATGGAACTTGGAGCCTGTTTGGCTGGCGAAAACG CTCGAACCAGCGCTGCAGCTCTGCCGGTGGGCGCTCCCTGGAGGGAGTGGAACTGGAAACAAAATTCCTCCAAGTGGTCGATCTATTTCGGAAATCATTA CCAGCATCCAGAAGAGTAAGATTGGGATTGAGGATTGGACCTTGAGTGATTTCACAATTGGCTTGTATCTTCTTTATCTTCGTCAGGGTTCTGTGAATGC GTTGGAGGATGTTAAGGGGATTCAAGTCTCATCTGAAGCAATAATTGAAGATCTGATTTATCACCTCGAATTAGCTAAAGGTTGCTACAAGGGTGATGTT TCTGGCCTTGTAAGGCACAGCATGCTCCGGGAGAGAAACATTCTCAAATACGTGAAAGATTCTATCGTGATGAGGCCTGGATATTATATTGGCATTGATC CACGGAGGAAGCTTGTGATTCTGGGAATTCGCGGTACTGATACAGTCTATGACCTCATCACCGACATTGTTTCATCAAGTGATGATGAAGTCACATTTGA AGGTTACTCGACTCATTTTGGTACCGCTGAAGCTGCTCGTTGGTTTCATAAACATGAGATGCAAACAATAAAGAAGTGCTTGGAGGAGAATGAGGGATAT AGGTTCAGGGTGGTGGGCCATTCTCTTGGAGGTGCCATTGCTTCTTTGCTGGCGATCATGCTCCGCAGATGTTCACACGAAGAACTTGGGTTTTCCCCCG AGCTTGTTTCTGCTGTTGGATATGCTACTCCTCCTTGTGTCTCCAGTGAAATTGCTGAAAGTTGTTCAGATTTTGTTATGAATGTTGTTATGCAGGATGA TGTCGTACCTAGATTAAGTGCAGCTTCTTTGGCACGAATGCGAAATGAAATTCTTCAAACTGATTGGACCAGTGTAATTGAGAAAGAAGACTGGAAAAGC GTTATAGGATTGGTCTCCAACGCAAAGCAAGTAGTTTCTTCAGTTCAGGATGTAGCTGGGAAGCTGGGCGACTTTGCAAGGTTGTGGGGGAAAAGTTCTC CAGATTCTCCGAAGAGGAAGACATCTCTTGTTCCTTTGACATTGAAACCTTCAAGAGAGCATGATCCCAGCAAGCAAAAGGAAGGGCACTCAACATCTAA GCCATCAAGAGAGAACAATGATAGCAAGGACGAAAAGGAAGGGGATGCAAATAGCGTGCCAGCAGAGTTGTTCGTTCCAGGGTCCGTGTACTATCTGAAG AGAAACATCGAAAGCAGAAGCAGCCACAGTGGCGAGAGGGGGTTGGAGTATTTCACACTGTTGAAGAGGCGGCCAGGCGAACACTTCCAGAAGATAGTTC TTTCCAACAACATCATCTCGGATCACAAATGCGACAGCCATCAGTACGCTCTGCGGGATGTACTCAAGGGCCTGTCTGATGCCCGAGATGACGCCCTTTT CCGGCGATGA
AA sequence Show only first row Show all	>Lus10000708 pacid=23144354 polypeptide=Lus10000708 locus=Lus10000708.g ID=Lus10000708.BGIv1.0 annot-version=v1.0 MKTEKKPYSTRSSPASSSTPSKPCKPPLHPNSTSKSKQPTNPFAAQATAQPPSATAACRRLRNRNVALSLNEVKKAATTTSAPPTPHQPNKSAAKSTRRR KLSWPDAPSPSVSKQGGSGGDGINNKLPEKYEMLIEFFNCLDNSVRLLKMKGSSSTFPNIFRIIESLSTRRFSHGNLAQLKYILPEAIEIKKVMKFDERT SCMKPDLHVSVNADAIEVDDETKSSEGKHSSLRNVFRKRLEKFCQSHPEGDEVPEEMLPEPFNYVKSDMVSEKPQSVNGESSPGTPFATENEALESLWPA AASHLSSSFRRSFSTKRKLEGKLLEDNPSFPQPVLPFSEPSLASDRDTDSPAIAIATAACIPQSPAKKMEVDSSSLQSTPARVVLTPTKLMSVTPAQCKQ KRSSTTMTPDGGSNSSPNKLVRRLPVNDDDDDLPESLLDSIREKQRKADEEKDPAISQAKRRRKMIASSPKLFDTIRFLFQSINRSVITKEELIHKILAG QLGIADRREIEERLNLLEEVLPEWISEKKALSGDLLCWYFLARQEAYRRLAGHVLRRWQSRTPGDTYLESTGKLDSKRNGGDEDDSSNKWNLEPVWLAKT LEPALQLCRWALPGGSGTGNKIPPSGRSISEIITSIQKSKIGIEDWTLSDFTIGLYLLYLRQGSVNALEDVKGIQVSSEAIIEDLIYHLELAKGCYKGDV SGLVRHSMLRERNILKYVKDSIVMRPGYYIGIDPRRKLVILGIRGTDTVYDLITDIVSSSDDEVTFEGYSTHFGTAEAARWFHKHEMQTIKKCLEENEGY RFRVVGHSLGGAIASLLAIMLRRCSHEELGFSPELVSAVGYATPPCVSSEIAESCSDFVMNVVMQDDVVPRLSAASLARMRNEILQTDWTSVIEKEDWKS VIGLVSNAKQVVSSVQDVAGKLGDFARLWGKSSPDSPKRKTSLVPLTLKPSREHDPSKQKEGHSTSKPSRENNDSKDEKEGDANSVPAELFVPGSVYYLK RNIESRSSHSGERGLEYFTLLKRRPGEHFQKIVLSNNIISDHKCDSHQYALRDVLKGLSDARDDALFRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42450			alpha/beta-Hydrolases superfam...		Lus10000708 [exp]	0	1
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10024879 [exp]	4.0	0.9330
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	5.1	0.9472
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	10.5	0.9376
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	12.6	0.9334
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10033526 [exp]	12.7	0.9159
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10020845 [exp]	16.1	0.9100
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	19.0	0.9191
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	21.2	0.9213
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	23.5	0.9123
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	24.5	0.9102

Compare expression of checked genes

Lus10000708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.