Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31260 475 / 1e-159 ATAPG9, APG9 autophagy 9 (APG9) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024880 [exp] 718 / 0 AT2G31260 900 / 0.0 autophagy 9 (APG9) (.1) Lus10003567 [exp] 607 / 0 AT2G31260 1093 / 0.0 autophagy 9 (APG9) (.1) Lus10033881 [exp] 602 / 0 AT2G31260 1021 / 0.0 autophagy 9 (APG9) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222800 [exp] 538 / 0 AT2G31260 952 / 0.0 autophagy 9 (APG9) (.1) Potri.002G039900 [exp] 528 / 4e-180 AT2G31260 1021 / 0.0 autophagy 9 (APG9) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04109 [flax] [poplar] APG9 Autophagy protein Apg9
Representative CDS sequence Show only first row Show all	>Lus10000709 pacid=23144353 polypeptide=Lus10000709 locus=Lus10000709.g ID=Lus10000709.BGIv1.0 annot-version=v1.0 ATGAGATTGATGCGGAAAGAGAACTACTTGATCAGAATGCTGAACAAAGGGGTATTCGTGTTCCCTATACCGTCATGGATTCCAGGTGCAGGCCCAACTG TCAAATTCGGCTCCGATGGAACTCAATATCGCTTGTTTCTTACAAAGACTCTTGAATGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTCGACCGAAA CTTCTGTGTTAAGATGGACTTCATCTCAAATCCTAAAACATTAGAGAAACAATTTTTGGTTGTTGGTCTTGCAATGCTTCTACTTTTTCCATTTCTCGTC ATATTCATGTGGATTTTTCGAGAATTCAATGAGGTTGACCATTTCTTCAAGCATCGAATCACAAGCAGCAGCAATCATGCTTCAGATTGTCTAAAACAGT TCCCATCACCTATGATTTCAATTATTGCAAAGTTTATCTCTTTTGTCTCTGGTGGATTTGCTGCCATTCTGCTGATTATTGCTTTTATGGAGGAGTCTTT ACTGGAGGGCCATATTTTCAGACGAGACTTGCTTTGGTATGTTGCTGTTTTTGGAACTATTACAGCCATCAGCCGAGCTGCAGTAACCGATGATCTCCTA GTTCTCCAGATGAAGCAATGTCTATGGTCGTACAACATACTCATTATATGCCTAAGAAATGGAGGGGCAACGAACACACCGAGGTGGTTAGAATGGAATT CGAAACCCTATTTCAGCACCTACACTATCCTGCAGCAAGTTGATGATATCTTGGAGTTCATAGCAAATTTCACAGTCGACGTAGAAGGTGTTGGCCATGT TTGCAGTTTTAGTGCGTTTGATTGTTCAAAGCATGGTAACAGCAACTATGGTTCGCCCAGTGATGCGCCTCTCACTGGAAGGAGCTCGCAGGGAAAGATG GAGAAATCAATGTTGAGCTTCAAGAGTAGTTATCCTTCATGGGAACCAAATGCTCAAGGGAAGCAGTTCCTGGTAAAGGTTGGAACTTTCAGGGAGCAGA AGCTTCAACGACCAGGAATTAGACATACGTATAATCACTATCATCCTCAATTGTTTCGTGGGAGCCCATTAAGACCATATAATCTGGATCAGAGGAATCA TTATCCGTATCTTCTGGACTGGTACTACACCTCTCGAGCTCGCCATTCAGCGAACAATACTGAAGATTTACGGAACCTTTCTTCCCCCGATTTCGCACCG AATGATGCTAGACATGATGACGATGAAGAGTACTGTGGTGGAAGCAATTGGTGGTGGAGTAGAGGAGACTCGGGTGAACGACAACCCCAAGCTAGTTTCC TCGAGCCGCCACCTGATTTCGACCGATACAAACCGAGTAGGAACTTAGAGAACTTGGTGGAAAGAAGCCTGGAGGAAGTGGAAGATCAGGACCTGGATTT GAGGAATTCGCGTAGTCTCTCCAGGACTGCTTACTCATATGATGATAATGACATTGAAGCAGGAGGAGGGAATTCGAGTCTGCATTTCGATAATGTTTAT GACAGCAGAAGTAATTAA
AA sequence Show only first row Show all	>Lus10000709 pacid=23144353 polypeptide=Lus10000709 locus=Lus10000709.g ID=Lus10000709.BGIv1.0 annot-version=v1.0 MRLMRKENYLIRMLNKGVFVFPIPSWIPGAGPTVKFGSDGTQYRLFLTKTLEWTLNWCILQSMFDRNFCVKMDFISNPKTLEKQFLVVGLAMLLLFPFLV IFMWIFREFNEVDHFFKHRITSSSNHASDCLKQFPSPMISIIAKFISFVSGGFAAILLIIAFMEESLLEGHIFRRDLLWYVAVFGTITAISRAAVTDDLL VLQMKQCLWSYNILIICLRNGGATNTPRWLEWNSKPYFSTYTILQQVDDILEFIANFTVDVEGVGHVCSFSAFDCSKHGNSNYGSPSDAPLTGRSSQGKM EKSMLSFKSSYPSWEPNAQGKQFLVKVGTFREQKLQRPGIRHTYNHYHPQLFRGSPLRPYNLDQRNHYPYLLDWYYTSRARHSANNTEDLRNLSSPDFAP NDARHDDDEEYCGGSNWWWSRGDSGERQPQASFLEPPPDFDRYKPSRNLENLVERSLEEVEDQDLDLRNSRSLSRTAYSYDDNDIEAGGGNSSLHFDNVY DSRSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10000709 [exp]	0	1
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10027396 [exp]	1.4	0.8324
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	1.7	0.8610
					Lus10004769 [exp]	4.9	0.8027
AT5G36930			Disease resistance protein (TI...		Lus10008415 [exp]	8.1	0.6965
					Lus10013650 [exp]	11.8	0.7829
					Lus10022938 [exp]	11.8	0.7779
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	14.5	0.7810
					Lus10018646 [exp]	16.0	0.7749
					Lus10013649 [exp]	20.4	0.7437
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	27.5	0.7424

Compare expression of checked genes

Lus10000709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.