Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04360 122 / 8e-32 RING/U-box superfamily protein (.1) AT5G43420 103 / 7e-25 RING/U-box superfamily protein (.1) AT3G16720 84 / 3e-18 ATL2 TOXICOS EN LEVADURA 2 (.1) AT3G18930 80 / 1e-16 RING/U-box superfamily protein (.1.2) AT3G48030 79 / 3e-16 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G17600 78 / 5e-16 RING/U-box superfamily protein (.1) AT5G40250 76 / 3e-15 RING/U-box superfamily protein (.1) AT1G23980 76 / 3e-15 RING/U-box superfamily protein (.1) AT1G72220 75 / 6e-15 RING/U-box superfamily protein (.1) AT5G10380 74 / 1e-14 ATRING1, RING1 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024881 [exp] 415 / 3e-146 AT1G04360 153 / 2e-43 RING/U-box superfamily protein (.1) Lus10021197 [exp] 105 / 6e-26 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10015167 [exp] 84 / 5e-18 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10012745 [exp] 81 / 7e-17 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10012975 [exp] 80 / 2e-16 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10009511 [exp] 79 / 3e-16 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10034953 [exp] 79 / 3e-16 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10029178 [exp] 79 / 4e-16 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10029456 [exp] 73 / 5e-16 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039700 [exp] 165 / 3e-48 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 128 / 4e-34 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 127 / 1e-33 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 76 / 3e-16 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 76 / 7e-16 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 77 / 1e-15 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 74 / 2e-15 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 76 / 3e-15 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 76 / 6e-15 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 75 / 6e-15 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10000710 pacid=23144356 polypeptide=Lus10000710 locus=Lus10000710.g ID=Lus10000710.BGIv1.0 annot-version=v1.0 ATGTCTTCACAAACATCAGACAACAACCCTTCACCAGTCCTCACAATCTCAATCCTCTGCATCGTCGGAGCATCATCTCTCTTCCTCCTCGCATACTATG TCTTCTTCCACAAATGCTCCTCCTCCTTCCTCCGCTTCTTCAGCCTCACCACAGATCCTGTAGCAGCAGATGAGGACTCCTTCATCGCCCTCTCCCCGAT CACCAACTGGACTCGAACCATCGGCCTCGACGACCTCGCCATTCGAGACCTCCCCACTCGACACTACTACCACCACCACCACCACACAACAGCAACGACA GAAACAACAACAACTGTCGATTACTTCAAATGCGTGGTGTGTCTGAACGACTTCCATGAACATGACGTCCTCAGAGTCCTCCCCAACTGCGCGCATTCCT TCCACTTGGACTGCATCGACGTCTGGCTCCACTCCAACTCCAATTGCCCCATATGCAGGACCGGAATCAATTCTTCTTCCTCCTCTGCATTCGGCTTCGT TGCTCCCATGTCTTCGCCACAAAGGGAAGCGGAGAGCGTGATCGGGAGTGACGAGGATTTCGTGGTGATTGAGTTGGGCGGAGGAGGTGGGGACTGTAAC GGAATTGTCAGGAGCGATTCGATGAGGAGAAAACAGAGTCCTCCTTCGAAACAGAGTAGTCCAGGAAAACAGGGGAAGCGTCAAAATGCCTCGATAATGG GGGATGAAGGGATCGATTTGGGGGCTGGTGGTGGTGATCGGTTTATGGTTGATTATCCGATGAGGAGGTCGTTCTCGTGGGGTTCGGCGGCGGATCGGCA GCTGTTGTCGAGTGTTCGAGCTGTGGTGGTACGACAGAACAGTCAGTCCAGGTGTTGTGAAGCGGAGAGTAGTAGTAGTTGTAGCAGCAACAGGGGAAAG AGGTTGTTCCTTCCGTTTGGTAAAGTCCGAGGTTCTAGAAACAACAACGCGGTTACTCCATTGAAATCCGATGTTTGTTTCAGTTAG
AA sequence Show only first row Show all	>Lus10000710 pacid=23144356 polypeptide=Lus10000710 locus=Lus10000710.g ID=Lus10000710.BGIv1.0 annot-version=v1.0 MSSQTSDNNPSPVLTISILCIVGASSLFLLAYYVFFHKCSSSFLRFFSLTTDPVAADEDSFIALSPITNWTRTIGLDDLAIRDLPTRHYYHHHHHTTATT ETTTTVDYFKCVVCLNDFHEHDVLRVLPNCAHSFHLDCIDVWLHSNSNCPICRTGINSSSSSAFGFVAPMSSPQREAESVIGSDEDFVVIELGGGGGDCN GIVRSDSMRRKQSPPSKQSSPGKQGKRQNASIMGDEGIDLGAGGGDRFMVDYPMRRSFSWGSAADRQLLSSVRAVVVRQNSQSRCCEAESSSSCSSNRGK RLFLPFGKVRGSRNNNAVTPLKSDVCFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04360			RING/U-box superfamily protein...		Lus10000710 [exp]	0	1
AT1G04360			RING/U-box superfamily protein...		Lus10024881 [exp]	1.0	0.9154
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	3.5	0.8222
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10023190 [exp]	5.7	0.7880
AT1G06980			unknown protein		Lus10038171 [exp]	6.0	0.8048
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10004230 [exp]	6.3	0.7570
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	7.7	0.7776
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10011583 [exp]	9.5	0.7522
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	9.7	0.7816
AT5G02440			unknown protein		Lus10040828 [exp]	13.4	0.7372
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	16.5	0.7670

Compare expression of checked genes

Lus10000710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.