Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24530 250 / 4e-81 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 224 / 6e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 223 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 196 / 1e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 195 / 2e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 179 / 2e-53 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 178 / 5e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 176 / 4e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19000 174 / 2e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G36690 171 / 2e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024882 [exp] 635 / 0 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 273 / 9e-90 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 247 / 8e-80 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 241 / 8e-78 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 218 / 1e-68 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 198 / 2e-60 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 196 / 9e-60 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037292 [exp] 189 / 6e-57 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 184 / 3e-55 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223000 [exp] 335 / 1e-114 AT4G10500 238 / 3e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G039500 [exp] 330 / 2e-112 AT4G10500 244 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G013600 [exp] 327 / 4e-111 AT4G10500 235 / 4e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G039600 [exp] 263 / 1e-86 AT4G10500 194 / 8e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 253 / 2e-82 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 249 / 1e-80 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 228 / 3e-72 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 228 / 3e-72 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 224 / 7e-71 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 223 / 2e-70 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10000711 pacid=23144352 polypeptide=Lus10000711 locus=Lus10000711.g ID=Lus10000711.BGIv1.0 annot-version=v1.0 ATGGCGAAACTGGTTTCTAGCTGGTACAAAGATGTCAAATCCCTGCCGGAAAGCTACATACTACCACCGGAGGAACGCCCCGGGACCTACCCGGTCCCGG TCAGCGACGACATCCCCGTGGTGGATCTCGAACGACCCGACTCCGCACAGCTCATTCTCAAGGCATGCCAGGAATTCGGTTTCTTCCAGGTGATTAACCA TGGAGTTAAGGAGGAGTTGATGGAGGAAGGGATGAAGGTGTTCTCCGAGTTCTTCGGCATGGCAGAGGAGGTGAAAGCAGAGTTTTACTCGGAAGAGCCG CAGTCGATTCCGTGTGTGGTTAGCACCAGCAGTGGAACTAACGTGGATAATGAAAAGGTGCATTTCTGGCGTGATATGCTCAGGCACAATTGCTATCCAC TTCATGAAAACGTCCCCTTTTGGCCTCAGAAACCCCAAGCATACAGAGAGGTAGTTGGAGAGTGCTCAGTGGAAGTGAGGAAGCTAGGAATGAGAATACT GGAGAAAATCAGCCAAGGTCTAGGACTTATGAACACTGAATACTTGAACCAATGTAGCAAATACATGTACTTGCAAGTGAACCATTACCCACCATGCCCC GACCCAACCCTCAGCCTCGGACTCTACAAGCACTGCGACCCGACCACCCTGACCATCCTGCGGCAAGACTCTTACGGCCTACAAGTCTTGAAGGACGGAC AATGGATCGGAGTCCAGCCCATTCCCACCGCTTTCGTCATCAATGTCGGCCATCAATTACAGGTGATCAGCAACGGGAAGCTGAAGAGCGCGGAACACAG GGCGGTGACGAACTCGAGCAAAGCGAGAACATCTGCCGCGTTCTTCATGCATCCCGACACCGACATTGTGGTTGAACCAGCGGGTATTTTAGTGGACGAG TCGAACCCACCCCGGTATAAAGCGTTTCAATATATAGACTTCATGAGGCAGTACAGCGCCAACCGTGGTCACGTTGAGAAAACCATCAAGCCGTTTGAGC TATGA
AA sequence Show only first row Show all	>Lus10000711 pacid=23144352 polypeptide=Lus10000711 locus=Lus10000711.g ID=Lus10000711.BGIv1.0 annot-version=v1.0 MAKLVSSWYKDVKSLPESYILPPEERPGTYPVPVSDDIPVVDLERPDSAQLILKACQEFGFFQVINHGVKEELMEEGMKVFSEFFGMAEEVKAEFYSEEP QSIPCVVSTSSGTNVDNEKVHFWRDMLRHNCYPLHENVPFWPQKPQAYREVVGECSVEVRKLGMRILEKISQGLGLMNTEYLNQCSKYMYLQVNHYPPCP DPTLSLGLYKHCDPTTLTILRQDSYGLQVLKDGQWIGVQPIPTAFVINVGHQLQVISNGKLKSAEHRAVTNSSKARTSAAFFMHPDTDIVVEPAGILVDE SNPPRYKAFQYIDFMRQYSANRGHVEKTIKPFEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10000711 [exp]	0	1
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	1.4	0.9439
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	2.8	0.9417
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	4.9	0.9411
AT1G74790			catalytics (.1)		Lus10036662 [exp]	5.5	0.9271
AT1G74790			catalytics (.1)		Lus10033116 [exp]	5.7	0.9404
					Lus10005395 [exp]	7.9	0.9298
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	9.7	0.9377
AT3G52230			unknown protein		Lus10028838 [exp]	9.9	0.9165
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	10.2	0.9336
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10041897 [exp]	10.8	0.9075

Compare expression of checked genes

Lus10000711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.