Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42760 458 / 1e-162 Leucine carboxyl methyltransferase (.1.2) AT4G02405 43 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032713 [exp] 665 / 0 AT5G42760 467 / 2e-166 Leucine carboxyl methyltransferase (.1.2) Lus10038881 [exp] 43 / 0.0002 AT4G02405 334 / 2e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10015003 [exp] 42 / 0.0006 AT4G02405 336 / 5e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G260300 [exp] 531 / 0 AT5G42760 483 / 9e-173 Leucine carboxyl methyltransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04072 [flax] [poplar] LCM Leucine carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000713 pacid=23176739 polypeptide=Lus10000713 locus=Lus10000713.g ID=Lus10000713.BGIv1.0 annot-version=v1.0 ATGTCGAGCTTGGAAAGTGGCAAGTTTCAGGATGACTCACAGTGGTCGGATGAGCTTAAGCTTTCCAAGTTGCTGAATACTCAGACGGTGAGGGAACTCC ATGTGGAGATCCAAACCCAGTGGGATCCTATAAGGTTGTCCGCGTGCCAGACTGCAGCAGGAAGAGCGTTGTGGAGGCATGTGATCCATGACCCTTTGGC TGATTTGTTAGCTGGGGAGACTTACCTCAGGAGTCTCCATGAGAAGATTAAGAATGACCTCCTCAACAATGCCCGCGAAACTTCGGGTGTCATTCTCGCT GTCAGAACCCTCTGGTTCGATTCCAAAATCGATGCTGCTCTCACTTCCTTCCATGCTCAAGCTCAGGTTGTTCTACTTGGTGCAGGTATGGATACAAGGG CGTACCGTCTAAGCAGCTTAAAGGAAACTGATGTCTTCGAGGTTGATTTCTCCGATGTCTTAGAAGTGAAAGCAACACTTCTAGAGGCAGCAACCAAGTC GATGAATGAACATCATCCACCAAGATTGACGGCAAAATCTCTCAACAGGGTAGCTGCAGACATTAGAAATAATGACTGGGTTGAAAAGCTCCAGAGATCA GGTTTTGAACCAGAAAAGAAGACGGTATGGGTTGTAGACGCCATCTCGCATTGCCTCTCCCACTCGCAAGCCTTGCAAGTACTGAACACCATAGCTGACA AGTGTTCCCTTACCCACACCGTCCTTCTAGCAGATTTTATGAACAAACCCTCGACCACTATGTCCAGTACTCTCTTCCACTTCTATAGTGATTGGCCTGA CGATCTACTCCCATCTCTCGGGTTCTCTGACGTAAAGCTGTCACAGATTGGCGATCCGGATGCTCATTTTGGGCTCATGGATGATCCATCAAATCTGTTC AACAAACTCCGCAGCTTGCCAAGGTCAGCACAAGTCCACCCAGATGATGGAACACCGTGTTGTCGCTTGTATTTAGTAGAGGCTTCTGGCTTGCCAAATC ATACCAACATATAG
AA sequence Show only first row Show all	>Lus10000713 pacid=23176739 polypeptide=Lus10000713 locus=Lus10000713.g ID=Lus10000713.BGIv1.0 annot-version=v1.0 MSSLESGKFQDDSQWSDELKLSKLLNTQTVRELHVEIQTQWDPIRLSACQTAAGRALWRHVIHDPLADLLAGETYLRSLHEKIKNDLLNNARETSGVILA VRTLWFDSKIDAALTSFHAQAQVVLLGAGMDTRAYRLSSLKETDVFEVDFSDVLEVKATLLEAATKSMNEHHPPRLTAKSLNRVAADIRNNDWVEKLQRS GFEPEKKTVWVVDAISHCLSHSQALQVLNTIADKCSLTHTVLLADFMNKPSTTMSSTLFHFYSDWPDDLLPSLGFSDVKLSQIGDPDAHFGLMDDPSNLF NKLRSLPRSAQVHPDDGTPCCRLYLVEASGLPNHTNI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	0	1
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	1.7	0.9410
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024935 [exp]	2.4	0.9211
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	2.8	0.9382
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019884 [exp]	5.0	0.9224
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10002166 [exp]	5.2	0.9183
AT5G42760			Leucine carboxyl methyltransfe...		Lus10032713 [exp]	6.6	0.9233
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10038093 [exp]	7.1	0.8983
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	7.2	0.9140
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	9.4	0.9186
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10014858 [exp]	9.5	0.9169

Compare expression of checked genes

Lus10000713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.