Plant FIBer expression Database

Lus10000715 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19430 64 / 3e-12 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032717
[exp]
264 / 3e-85 AT1G19430 867 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G260600
[exp]
86 / 6e-20 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10000715 pacid=23176737 polypeptide=Lus10000715 locus=Lus10000715.g ID=Lus10000715.BGIv1.0 annot-version=v1.0
ATGGCGTTAGCTAGATTAGCCCGCCAGGCTAAACGCCCATTTGGGCTATGCGCCAAGATGACTGCAGTAGGTATACTGGGTCTCTGCTTCATTTTTGTTT
GGTCAATTTTCTCGTCTCCTTCCTCTTCAGTCACCACTCAGAGGGAAAGCTTCGATGACATTGCCGAACCTGCTTCTTCCCGATCTCGGTCCACACTGCC
CCCGGTCAACGACAACACTTGGAATCGGCCTTCCCGATCTAAAGTCTTGGAATCCAACGCAACAGATCAGATTGATAAGAAGGCTAATGGGGCCGTTTCT
TCTGTGGGCAACGAAGACCATCGAAATCAGCACCACACTTCCACTTCTGCTAAAAAGCAGCTTCCAGCTTTGGAGGAGACTAATGGAAATGGACAAGAGG
AGGAGGATAATTCTGGTATTGAAGATGAACAAGGGCAAGTGATAGATGGTAAAGAGGAGACTGATGTCAATGGTGGACTGATGTTAATCGTGACGATTCA
GTACTAG
AA sequence
>Lus10000715 pacid=23176737 polypeptide=Lus10000715 locus=Lus10000715.g ID=Lus10000715.BGIv1.0 annot-version=v1.0
MALARLARQAKRPFGLCAKMTAVGILGLCFIFVWSIFSSPSSSVTTQRESFDDIAEPASSRSRSTLPPVNDNTWNRPSRSKVLESNATDQIDKKANGAVS
SVGNEDHRNQHHTSTSAKKQLPALEETNGNGQEEEDNSGIEDEQGQVIDGKEETDVNGGLMLIVTIQY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G19430 S-adenosyl-L-methionine-depend... Lus10000715
[exp]
0 1
AT3G12020 P-loop containing nucleoside t... Lus10029307
[exp]
3.5 0.7715
AT3G02130 TOAD2, RPK2, CL... TOADSTOOL 2, clv3 peptide inse... Lus10035126
[exp]
4.9 0.7703
AT1G58520 RXW8 lipases;hydrolases, acting on ... Lus10010365
[exp]
4.9 0.7467
AT3G52200 LTA3 Dihydrolipoamide acetyltransfe... Lus10001967
[exp]
6.5 0.7712
AT1G71270 ATVPS52, TTD8, ... T-DNA TRANSMISSION DEFECT 8, P... Lus10016549
[exp]
6.6 0.8147
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Lus10018668
[exp]
7.0 0.8307
AT1G71360 Galactose-binding protein (.1) Lus10003532
[exp]
7.7 0.7320
AT5G66030 ATGRIP, GRIP Golgi-localized GRIP domain-co... Lus10010675
[exp]
8.9 0.7751
AT5G22780 Adaptor protein complex AP-2, ... Lus10019520
[exp]
9.8 0.8302
AT5G28350 Quinoprotein amine dehydrogena... Lus10005119
[exp]
11.4 0.8189

Lus10000715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.