Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19430 796 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 549 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 542 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 540 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 527 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G40280 446 / 3e-152 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 439 / 4e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 373 / 2e-122 Putative methyltransferase family protein (.1) AT2G39750 364 / 6e-119 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 352 / 1e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032717 [exp] 930 / 0 AT1G19430 867 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020894 [exp] 547 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 545 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 543 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 536 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019644 [exp] 535 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028650 [exp] 532 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028354 [exp] 514 / 2e-174 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 509 / 3e-173 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G260600 [exp] 853 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 558 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 554 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 548 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G184500 [exp] 546 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 538 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 523 / 2e-176 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 461 / 3e-157 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 357 / 2e-116 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 357 / 3e-116 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000716 pacid=23176735 polypeptide=Lus10000716 locus=Lus10000716.g ID=Lus10000716.BGIv1.0 annot-version=v1.0 ATGGAGACTGTCAATATTAATGGAAAGATGCAAAGCTATAGGCATACCGAGAGGAGCTGTCCTAGGACCCCTCTGATGTGTCTTGTGCCTTTACCTCACG AGGGTTACGCGTCTCCTGTTCGTTGGCCAGAGAGCAAGCTCAAGGTGTTGTACAAGAACGTTGGACATCCAAAGCTTGCTGTTTTTGTGAATAGAAGAAC TTGGGTGGTGCATTCTGGTGAATATCTCACGTTTCCTCAGAATCAGACTCAATTCAAGGGCGGAGTTCAGCATTACCTTGATTTCATTGAGGAGATGGTA CCAGATATTGAATGGGGAAAGAACATTCGCCTAGTTATGGACGTTGGATGTTCAGATTCCAGCTTTGCAGCTTCTCTAATTGACAAGGATGTGCTAACTT TATCACTCGGGCTGAAAGATGATTTAGTTGACATAGCTCAGGTTTCCCTTGAACGTGGTTTTCCTGCAATTGTTAGCCCATTTGGGAGCAGAAGACTCCC CTTCCCTAGTGGTGTGTTTGATGTTATTCATTGTTTCAGCTGCGGAATTCCGTGGCATTCTAATGAGGGTAAGAGTCTTCTGGAGATGAATAGACTTATG AGGCCGGGTGGATATTTCATCTTGTCTAGTAAGCATGACAACATTGAAGTGGAAGAAGCCATGACTAAGTTAACTGCGTCGCTCTGCTGGAACATCCTGG CTCATAAAACTGACGAGGACAGTGATGTGGGTATTAAAATATATCAGAAGCCTGATTCAAATGACATATATGAACTTCGAAGGAAGAAGAACCCGCCTAT GTGCAAAGAAACTGAGAATCCAGATGCTGCTTGGTATATTCCTATGAAGATGTGCTTGCATCCTATTCCATCTTCGATTGAACAACGTGGGACCGAGTGG CCTCTGGACTGGCCAAAGAGGCTTGAGGCTTATCCTGAATGGATGAGCAACAAAGAGAGACTAGTTGCTGACTCAAGTCACTGGAAAGCAATTGTTGACA AGTCCTATCTTTCTGGAATTGGTATCGACTGGTCAAATATTCGGAATGTGATGGACATGAAAGCCATCCATGGAGGATTTGCTGCAGCATTGTCACAAAC ACAGAAGAACCTGTGGGTGATGAATGTAGTCCCAGTACATGCACCAGACACGCTTCCAATCGTTTTTGAACGTGGTCTCATTGGAATCTATCATGATTGG TGCGAATCTTTCAGCACATATCCAAGATCATATGATCTCTTACACGCAGATCATCTGTTTTCACGGCTGAAGAACAGGTGTAAGCAGCCTGTTTCAATCG TTGTGGAGATGGACCGGATATTGAGACCGGGTGGGTGGGTGATAGTAAGAGACAAGGTTGGGATCTTGGTTCCATTGGAGGAGATACTGAGGAGTTTGAA ATGGGAGATCAGGATGAGTTATGCTCAGCATAAAGAGGGTATGCTATGCGCTCAGAAAACCATGTGGAGGCCTTAA
AA sequence Show only first row Show all	>Lus10000716 pacid=23176735 polypeptide=Lus10000716 locus=Lus10000716.g ID=Lus10000716.BGIv1.0 annot-version=v1.0 METVNINGKMQSYRHTERSCPRTPLMCLVPLPHEGYASPVRWPESKLKVLYKNVGHPKLAVFVNRRTWVVHSGEYLTFPQNQTQFKGGVQHYLDFIEEMV PDIEWGKNIRLVMDVGCSDSSFAASLIDKDVLTLSLGLKDDLVDIAQVSLERGFPAIVSPFGSRRLPFPSGVFDVIHCFSCGIPWHSNEGKSLLEMNRLM RPGGYFILSSKHDNIEVEEAMTKLTASLCWNILAHKTDEDSDVGIKIYQKPDSNDIYELRRKKNPPMCKETENPDAAWYIPMKMCLHPIPSSIEQRGTEW PLDWPKRLEAYPEWMSNKERLVADSSHWKAIVDKSYLSGIGIDWSNIRNVMDMKAIHGGFAAALSQTQKNLWVMNVVPVHAPDTLPIVFERGLIGIYHDW CESFSTYPRSYDLLHADHLFSRLKNRCKQPVSIVVEMDRILRPGGWVIVRDKVGILVPLEEILRSLKWEIRMSYAQHKEGMLCAQKTMWRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	0	1
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	2.4	0.8438
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	6.3	0.8318
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	10.7	0.7535
AT4G19110			Protein kinase superfamily pro...		Lus10033278 [exp]	12.1	0.8227
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	12.5	0.7417
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10028274 [exp]	14.7	0.7994
AT4G21215			unknown protein		Lus10007639 [exp]	16.0	0.7763
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	20.0	0.7409
AT3G05940			Protein of unknown function (D...		Lus10001426 [exp]	21.7	0.7845
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10041291 [exp]	22.5	0.7545

Compare expression of checked genes

Lus10000716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.