Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20990 201 / 3e-59 B73, CNX1, SIR4, CHL6 SIRTINOL 4, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE, CHLORATE RESISTANT 6, molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001152 [exp] 315 / 5e-103 AT5G20990 899 / 0.0 SIRTINOL 4, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE, CHLORATE RESISTANT 6, molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156400 [exp] 231 / 2e-70 AT5G20990 971 / 0.0 SIRTINOL 4, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE, CHLORATE RESISTANT 6, molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03454 [flax] [poplar] MoeA_C MoeA C-terminal region (domain IV)
Representative CDS sequence Show only first row Show all	>Lus10000717 pacid=23147769 polypeptide=Lus10000717 locus=Lus10000717.g ID=Lus10000717.BGIv1.0 annot-version=v1.0 ATGTTTTATCCGCAGGTTTGCATGACACCTGACAAGCCTTTGACTTTTGTCGAGGTCCCGACAAAAACAATTAACCCTGCAACCAGAAAACTTCTTACAC TTGGGTTACCCGAAAATCCTGTAAGCTGTCTAGTTTGGTTTTATCTCTTTGTGGTTCCTGCTATTCGCCGTCTTGCTGGATGGGAAAATCCTCATCTTTT GAGAGTGCATTCTCGTCATCATCAACCAATGAAGACGGATCCAGTACGACCAGAATTTCATCTTGCCACTGTTAAATGGAAGGCCAATGATGGATCAGGG AATCCAGGATTTGTTGCTGAAAGCACTGGCTCCCAGATGAGTAGCCGACTACTGAGTATGAAATCAGCTAATGTGCTGCTGGAGTTGCCAGGAACAGGAA CTTTAATACCAGCTGGCACTTCTGTCTCAGCCCTTGTTATTACTGATTTAAGCTCTAATGCTATCCCTGATGACCGTATTTCACCAGAATTGGCATCTTC AATTCAAAGTACACCTGGTGAGACAGCAGCAGGTTCTGAGCATGTCGTTTATTTGCTTCTTGCTGGAACAGGTTACACCATTTTCCATGTTATCAAGGGC AGCAGCTGGTATAAGGGGCACATCACTGGTAAGCAAAGGCGTGCCTTGTTTGACAAAGTGCATCTCTGTTCAACCATTTACAGAATGTCTGGTGTGGGTG CAGATGATCAATATGCAGGGAACCCGAATGCGGTCGCTGAATGTATGGAAGCTATATTACCAGTACTGAAGCACGCTCTCAAACAGATCAAAGGGGACAA GCGGGAGAAACATCCTCGTCATCTCCTACACGCACACCAACCGGCTGACACATGGGAGCGCAGGTTTAGGTCGGCTGCTGTTAGAAAATTAACAGAATCT CCTACGACTACTATAACTACTTGTGGTGGTGGTGGTTGCTCTTGCTCCCACTAA
AA sequence Show only first row Show all	>Lus10000717 pacid=23147769 polypeptide=Lus10000717 locus=Lus10000717.g ID=Lus10000717.BGIv1.0 annot-version=v1.0 MFYPQVCMTPDKPLTFVEVPTKTINPATRKLLTLGLPENPVSCLVWFYLFVVPAIRRLAGWENPHLLRVHSRHHQPMKTDPVRPEFHLATVKWKANDGSG NPGFVAESTGSQMSSRLLSMKSANVLLELPGTGTLIPAGTSVSALVITDLSSNAIPDDRISPELASSIQSTPGETAAGSEHVVYLLLAGTGYTIFHVIKG SSWYKGHITGKQRRALFDKVHLCSTIYRMSGVGADDQYAGNPNAVAECMEAILPVLKHALKQIKGDKREKHPRHLLHAHQPADTWERRFRSAAVRKLTES PTTTITTCGGGGCSCSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	0	1
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	1.4	0.8813
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	2.0	0.8562
					Lus10007473 [exp]	2.2	0.8264
					Lus10008005 [exp]	2.4	0.8028
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10018228 [exp]	3.7	0.7902
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	4.9	0.8295
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	8.1	0.8310
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	8.5	0.7825
AT4G39050			Kinesin motor family protein (...		Lus10017906 [exp]	9.5	0.7334
AT1G18060			unknown protein		Lus10012667 [exp]	13.7	0.7567

Compare expression of checked genes

Lus10000717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.