Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28370 239 / 3e-81 Uncharacterised protein family (UPF0497) (.1) AT2G37200 174 / 2e-55 Uncharacterised protein family (UPF0497) (.1) AT3G53850 115 / 9e-33 Uncharacterised protein family (UPF0497) (.1) AT3G23200 112 / 1e-31 Uncharacterised protein family (UPF0497) (.1) AT5G02060 92 / 8e-24 Uncharacterised protein family (UPF0497) (.1) AT3G50810 77 / 7e-18 Uncharacterised protein family (UPF0497) (.1) AT4G37235 67 / 4e-14 Uncharacterised protein family (UPF0497) (.1) AT1G49405 50 / 5e-08 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021469 [exp] 306 / 1e-107 AT2G28370 258 / 7e-89 Uncharacterised protein family (UPF0497) (.1) Lus10041312 [exp] 271 / 9e-94 AT2G28370 258 / 9e-89 Uncharacterised protein family (UPF0497) (.1) Lus10037399 [exp] 261 / 7e-90 AT2G28370 259 / 4e-89 Uncharacterised protein family (UPF0497) (.1) Lus10004698 [exp] 99 / 2e-26 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10040264 [exp] 95 / 8e-23 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10022188 [exp] 86 / 2e-21 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1) Lus10021202 [exp] 74 / 1e-15 AT1G06620 202 / 2e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024355 [exp] 68 / 7e-15 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1) Lus10010881 [exp] 68 / 1e-14 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014600 [exp] 254 / 3e-87 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 241 / 3e-82 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 206 / 2e-68 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.006G090400 [exp] 111 / 3e-31 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.010G198700 [exp] 100 / 5e-27 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 92 / 1e-23 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 91 / 2e-23 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 91 / 3e-23 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 87 / 8e-22 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.007G033600 [exp] 56 / 4e-10 AT4G37235 133 / 1e-40 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10000718 pacid=23149273 polypeptide=Lus10000718 locus=Lus10000718.g ID=Lus10000718.BGIv1.0 annot-version=v1.0 ATGAGTGTGAGCCATGCGTCGATTCATCCGGTGGACGATCCTTCTCCGACGACTGAAGGCGGGAACAACAACAATGACAACGACAATGACAACGACATCA ACGCTCCGGCGAGAGTTCGGATGAAGGATATACAAGGGATGCCGGGAACGAAAGTCGGACTCGTCTTGCGAGTGGCTCAGTTCTTCTTCGCGGCTGCTGC TCTTGTCGTCATGGCCACCACTAGCGATTTCCCTTCCGTCACTGCCTTCTGCTACCTTGTTGCAGCAGCTGGGTTGCAGTGCTTGTGGAGCCTTTCTCTA GCCGTTGTCGATATATATGCTCTCTTAGTGCTGCGGTCATTGCAGAATCATCAAGTTGTCTGCTTGTTTGCAATTGGCGATGGGGTCACTTCAACCCTCA CATTCGCAGCAGCATGTGCATCCGCGGGGATCACAGTCCTGATCGATAACGACCTCGATAACTGTGCGAAGAACCACTGCATACAGTTCGAAACCGCTAC AGCAATGGCTTTCATCAGCTGGTTCACCACATTGCCATCTTTTCTCTTGAACTTTTGGTCCCTCGCTTCAAGCTAG
AA sequence Show only first row Show all	>Lus10000718 pacid=23149273 polypeptide=Lus10000718 locus=Lus10000718.g ID=Lus10000718.BGIv1.0 annot-version=v1.0 MSVSHASIHPVDDPSPTTEGGNNNNDNDNDNDINAPARVRMKDIQGMPGTKVGLVLRVAQFFFAAAALVVMATTSDFPSVTAFCYLVAAAGLQCLWSLSL AVVDIYALLVLRSLQNHQVVCLFAIGDGVTSTLTFAAACASAGITVLIDNDLDNCAKNHCIQFETATAMAFISWFTTLPSFLLNFWSLASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28370			Uncharacterised protein family...		Lus10000718 [exp]	0	1
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10015891 [exp]	2.8	0.8392
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031898 [exp]	10.0	0.7961
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	18.2	0.8154
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034383 [exp]	20.8	0.8121
AT5G59830			unknown protein		Lus10005889 [exp]	22.0	0.7108
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	22.8	0.7506
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	25.8	0.7664
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	28.7	0.7892
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10013317 [exp]	28.9	0.8051
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	32.3	0.7370

Compare expression of checked genes

Lus10000718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.