Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60690 1341 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT2G34710 1095 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1077 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G52150 1071 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1062 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT1G79840 105 / 7e-23 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT1G73360 81 / 2e-15 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT5G52170 78 / 2e-14 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G17710 76 / 7e-14 HD HDG4 homeodomain GLABROUS 4 (.1) AT1G17920 74 / 3e-13 HD HDG12 homeodomain GLABROUS 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021470 [exp] 1600 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 1100 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10023357 [exp] 1095 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10037568 [exp] 1068 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011426 [exp] 993 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10011616 [exp] 993 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10002037 [exp] 785 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10007650 [exp] 98 / 1e-20 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10031892 [exp] 93 / 4e-19 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014500 [exp] 1368 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.004G211300 [exp] 1352 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.001G372300 [exp] 1165 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 1156 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.001G188800 [exp] 1097 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1084 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.006G237500 [exp] 1078 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.018G045100 [exp] 1069 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.003G052400 [exp] 100 / 1e-21 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.011G025000 [exp] 87 / 3e-17 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF08670 [flax] [poplar] MEKHLA MEKHLA domain CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10000719 pacid=23149275 polypeptide=Lus10000719 locus=Lus10000719.g ID=Lus10000719.BGIv1.0 annot-version=v1.0 ATGGCGATGACCAGACCGGGAGCAGGATCGGGAACGGACGGCAGCGGCGGAAGGAAAGTGTTTTTAGAGAGGGCAGTGTTTTCCGAGAGGCGAGAGTTAA AAGGGAAGCCGAAGGGGGAAGAGGAAGAACGGGCGCGGGGGGGGCCCCCCGGCCGAGAGACTAGCAGCGGCGGCGGAGGAGGAGGGAGTATTACAAAGCA CTTGGCCGACAACGGGAAGTACGTTCGGTACACGGCGGAGCAAGTGGAAGCGCTTGAAAGAGTGTACGCAGAGTGTCCAAAGCCGAGCTCTTTGAGGAGG CAGCAGCTGATTAGAGAATGCCCCATTCTCTGCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACCGCAGGTGTCGAGAGAAGCAGAGGAAAG AAGCTTCGAGGCTTCAGACAGTGAACAGGAAGCTGACGGCGATGAACAAGCTGTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTTTCTCAGCTTGT GGTTGAGAATGGGTACATGCGCCAACAACTCCAGACTCTCAATGCATCAGGAGGAACTGATGGGAGTTGTGACTCAGTGGTTACAACTCCTCAGCATTCA CTGAGAGATGCCAATAACCCTGCTGGACTGCTCTCCATTGCGGAGGAGACCTTGACAGAGTTCCTATCAAAGGCTACAGGAACCGCTGTCGATTGGGTCC AGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCGATTTCACAAAGTTGTGGTGGAGTGGCAGCTCGAGCCTGCGGTCTTGTGAGCTT AGAACCAACTAAGATAGCAGAGATACTCAAAGATCGTCCATCTTGGTTCCGGGATTCTCGGAGCCTTGAAGTGTTTACCTTGTTTCCAGCTGGAAATGGT GGAACTATTGAGCTAGTGTATAGTCAGACGTATGCTCCTACAACGCTGGCTCCTGCTCGAGATTTCTGGACTCTCCGTTACACTAAAAATTTAGAGAATG GCAGCCTTGTGGTCTGCGAGCGATCTCTTTCTGGATCGGGTGCTGGTCCGAGTCAAGCCGCTTCTGCTCAGTTTGTTAGAGCCGAAATGCTTCCGAGTGG CTACTTGATTCGGCCGTGTGATGGTGGAGGGTCAATCATTCACATCGTCGATCATCTTAACCTCGAGGCTTGGAGTGTTCCCGAGGTGCTCCGACCTCTG TACGAATCGTCGAAAGTTGTGGCGCAGAAAATCACAATCGCGGCACTACGTTACGTCAGGCAAATAGCGCAAGAGACGAGTGGGGAAGTGGTGTATGGTC TCGGCAGACAGCCTGCCGTTCTTAGAACATTCAGTCAACGATTGAGCAGAGGGTTCAACGATGCGGTCAATGGTTTCAGCGATGACGGTTGGTCGATGAT GACCACATGTGACGGGGCTGAAGATGTAATAATTTCGGTTAACTCAACCAAGAACTTGACCAGCACTTCTAATAATACGGCTGGCAATAATTCGTTCCCG TTCCTCGGAGGGATCCTTTGTGCTAAGGCTTCCATGCTATTGCAAAATGTCCCTCCTGCAGTTCTGGTTCGCTTCCTAAGGGAACACCGTTCGGAATGGG CCGATTTCAATGTTGATGCTTATTCTGCTGCCTCCTTGAAGCCCGGTTCGTATGCATATCCCGGAAGCAGGCCTACCAGGTTTACCGGAAGCCAAATAAT AATGCCACTTGGCCACACGATCGAGAACGAGGAGATGCTTGAAGTTATTCGACTCGAAGGCCATTCTCTAGTGCAAGAAGATGCTTTTGTTTCGAGGGAC ATTCATCTCTTGCAGATATGTAGCGGAATCGATGAAAATGCAGTCGGAGCATGTTCAGAACTCGTCTTTGCTCCAATTGACGAAATGTTCCCCGATGATG CACCGTTGCTCCCTTCTGGCTTTCGTGTCATCCCGCTGGATTCAAAAGCAAAGGATACACAGGATGCCTTGAACACAAATCGTACGCTAGATCTCACGTC AAGTCTCGAAGTAGGCACTGCAACAAACCCTTCTGCTCCTGACTCGACATCTGGCCAGAATTCGAGATCAGTGTTGACCATTGCGTTCCAGTTCCCGTTC GAGAGCAACCTGCAGGAGAATGTTGCCACCATGGCAAGGCAATATGTAAGGAGTGTGATATCTTCGGTCCAGAGGGTCGCCATGGCCATATCCCCTTCTG GTTTGAGCCCATCCGTTGGTCGAAACTTGTCCCCGGGCTCTCCTGAAGCCCTCACCTTAGCTCAGTGGATCAACCAAAGTTACAGGCAAGTTTACTACAT CGGAGCAGAGCTACTGAGCTCTGATGATTCTTCTACTGGCGACTCTTTGTTGAAGAGTCTCTGGCATCATCCGGATGCCATCTTATGCTGTTCATTAAAG TCTCTTCCGGTGTTCATCTTTGCCAATCAAGCCGGGCTTGATATGCTGGAAACTACTCTAGTGGCCCTCCAGGACATCACATTGGACAAGATCTTTGACG AATCTGGGCGCAAGGCATTGTATGCAGATTTCGCAAAGTTGACCGATCAGGGTTTTGCTTACTTGGCTGGAGGGATATGCATGTCGACGATGGGGCGCCA TGTGTCGTTCGACCAAGCTGTCTCGTGGAAAGTGCATGCTGCTGGAGATGAGAACACTGTGCATTGCTTAGCCTTCTCGTTTGTGAACTGGTCTTTTGTA TGA
AA sequence Show only first row Show all	>Lus10000719 pacid=23149275 polypeptide=Lus10000719 locus=Lus10000719.g ID=Lus10000719.BGIv1.0 annot-version=v1.0 MAMTRPGAGSGTDGSGGRKVFLERAVFSERRELKGKPKGEEEERARGGPPGRETSSGGGGGGSITKHLADNGKYVRYTAEQVEALERVYAECPKPSSLRR QQLIRECPILCNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVVENGYMRQQLQTLNASGGTDGSCDSVVTTPQHS LRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPTKIAEILKDRPSWFRDSRSLEVFTLFPAGNG GTIELVYSQTYAPTTLAPARDFWTLRYTKNLENGSLVVCERSLSGSGAGPSQAASAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPL YESSKVVAQKITIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFSDDGWSMMTTCDGAEDVIISVNSTKNLTSTSNNTAGNNSFP FLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKPGSYAYPGSRPTRFTGSQIIMPLGHTIENEEMLEVIRLEGHSLVQEDAFVSRD IHLLQICSGIDENAVGACSELVFAPIDEMFPDDAPLLPSGFRVIPLDSKAKDTQDALNTNRTLDLTSSLEVGTATNPSAPDSTSGQNSRSVLTIAFQFPF ESNLQENVATMARQYVRSVISSVQRVAMAISPSGLSPSVGRNLSPGSPEALTLAQWINQSYRQVYYIGAELLSSDDSSTGDSLLKSLWHHPDAILCCSLK SLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALYADFAKLTDQGFAYLAGGICMSTMGRHVSFDQAVSWKVHAAGDENTVHCLAFSFVNWSFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	0	1
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10021470 [exp]	1.0	0.9654
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10010047 [exp]	3.5	0.8646
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	4.0	0.8450
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10020551 [exp]	5.1	0.7758
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	5.5	0.8863
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	11.5	0.8156
AT5G02440			unknown protein		Lus10040828 [exp]	11.5	0.7590
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	12.0	0.7968
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	15.2	0.7675
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10028974 [exp]	15.5	0.8427

Compare expression of checked genes

Lus10000719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.