Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28380 319 / 5e-105 DRB2 dsRNA-binding protein 2 (.1) AT3G26932 218 / 6e-67 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 219 / 1e-66 DRB5 dsRNA-binding protein 5 (.1) AT3G62800 111 / 3e-27 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 82 / 1e-16 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021471 [exp] 733 / 0 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10035176 [exp] 224 / 3e-68 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10032007 [exp] 223 / 6e-68 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10041311 [exp] 154 / 6e-43 AT2G28380 191 / 1e-57 dsRNA-binding protein 2 (.1) Lus10003362 [exp] 92 / 3e-21 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 94 / 5e-20 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002619 [exp] 83 / 8e-17 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10008862 [exp] 72 / 4e-13 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10023248 [exp] 72 / 6e-13 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063700 [exp] 235 / 7e-72 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 230 / 5e-70 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 218 / 1e-64 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.005G045700 [exp] 211 / 7e-62 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.019G038226 [exp] 99 / 4e-23 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.013G061500 [exp] 101 / 7e-23 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038184 [exp] 98 / 2e-22 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 99 / 6e-22 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.019G037900 [exp] 92 / 1e-19 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.017G126700 [exp] 86 / 9e-18 AT1G09700 121 / 5e-30 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10000721 pacid=23149274 polypeptide=Lus10000721 locus=Lus10000721.g ID=Lus10000721.BGIv1.0 annot-version=v1.0 ATGTACAAGAACCAGCTCCAGGAGCTGGCCCAGCGGAGCTGCTTCAACCTCCCTGCCTACACTTCGATAAGGGAAGGTCCCGACCACGCACCGCGGTTCA AAGCCACCGTCAATTTCAACGGCGAGGTCTTCGAATGTCCTCACTACTGTACCACTCTCCGACAGGCTGAGCACTCCGCCGCCGAAGTCGCTCTCAACTC CCTCTCCCACCGCGGCCCTTCTCACTCCCTCGCCGCCCGCATTCTGGATGAAACAGGGGTATACAAGAACCTACTGCAGGAAATTGCTCAGAGAGTCGGT GCTCCGTTGCCACAATACACGACGTTTAGGTCAGGTCTCGGCCACCAGCCAGTGTTTACTGGGATCGTAGAATTGGCGGGAATTTCGTTCACTGGTGATG CTGCCAAGAACAAAAAGCAAGCAGAGAAGAATGCTGCAATGGCCGCTTGGTCCTCCCTAAAACAATTGGCAAAGGAAGAGTCGAGTTCATCATCTGAACC AGAGAACAACGACGAGCTCGAGCAGATAACAATAGCAAGAGCCTTGCTGAATTACCGTAAGAAGGAAAGAATGGCACAGGCAAACTCCCCGAATGCACCG ATTCCTTTCCAGATGAAGTTTCCACCTCAAAACACTAGACCAACTAGTCCCCAACCTGCTCCTGCAGCAACCTCAAGAATCCTTCCTCTCATCTATCCGA AGCCAACTCGAAATAGACCTATGGTAGCCCCCGACAGACATCAATACTCCAGATCCACCTCAGCTACACCAAATGACAGGTTTGCCCCTCCTAGACCCAC AAACGACCGGCACGTACCGGCTAGACAGCCAAATGTGCTCGATCTCTGGGCACATCAGCCTCAGCCATATATCCCAATGCAGCCGTTCGGCCAAACTTGC CGCTCCACTGTTCAGCCAGTGACGATAAGGCATGCAGTACCATGCTACGCCGCACCTCCACCGCGTCCTATGGTGGTCCCCTCTCACTCAGTTCGAGCGC CACTCATTGGCCGTAATGTAATGCCCGTGACCATAAGGCAGGCTGTGCCGGTCTTTGCTGCTCCTCCCCCTTCAGTCCGGAAGGTAGACTCCCCGACCAT GCAGAAGGACTCAATTGAATCCAAGAAAGATTTGTCTGTTGAATTCAAGCAACAGGAATCCAAGAAAGATTCCCCTTTTGAATTCAAGGAACAGGAATCC AAGAAAGATTCGCCTATCGAATTCAAACAAAAGGAATCCAAGAAAGATTCGCCTGTGGAATCCAAGCAAGAGGATGCAATCCCGATCGCTGTTATACCAG CTCAGGTGGAGGAAGAGAAGCAGAAAATAGCGAACTGTACGACCGAAGTGAAGGAGTTGTCGAAGGTCGATGCGAGCTTGGAGAAACTGAAGATCTGA
AA sequence Show only first row Show all	>Lus10000721 pacid=23149274 polypeptide=Lus10000721 locus=Lus10000721.g ID=Lus10000721.BGIv1.0 annot-version=v1.0 MYKNQLQELAQRSCFNLPAYTSIREGPDHAPRFKATVNFNGEVFECPHYCTTLRQAEHSAAEVALNSLSHRGPSHSLAARILDETGVYKNLLQEIAQRVG APLPQYTTFRSGLGHQPVFTGIVELAGISFTGDAAKNKKQAEKNAAMAAWSSLKQLAKEESSSSSEPENNDELEQITIARALLNYRKKERMAQANSPNAP IPFQMKFPPQNTRPTSPQPAPAATSRILPLIYPKPTRNRPMVAPDRHQYSRSTSATPNDRFAPPRPTNDRHVPARQPNVLDLWAHQPQPYIPMQPFGQTC RSTVQPVTIRHAVPCYAAPPPRPMVVPSHSVRAPLIGRNVMPVTIRQAVPVFAAPPPSVRKVDSPTMQKDSIESKKDLSVEFKQQESKKDSPFEFKEQES KKDSPIEFKQKESKKDSPVESKQEDAIPIAVIPAQVEEEKQKIANCTTEVKELSKVDASLEKLKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	0	1
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	3.0	0.7693
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	3.7	0.8034
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	5.3	0.7509
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	6.0	0.7971
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	10.5	0.7309
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	10.8	0.7664
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002251 [exp]	11.8	0.6853
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10038693 [exp]	13.6	0.7534
AT3G06240			F-box family protein (.1)		Lus10038603 [exp]	17.0	0.7051
AT5G53280		PDV1	plastid division1 (.1)		Lus10027574 [exp]	19.0	0.6671

Compare expression of checked genes

Lus10000721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.