Plant FIBer expression Database

Lus10000722 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28390 611 / 0 SAND family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021472
[exp]
1087 / 0 AT2G28390 656 / 0.0 SAND family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G211200
[exp]
686 / 0 AT2G28390 739 / 0.0 SAND family protein (.1)
Potri.009G014400
[exp]
676 / 0 AT2G28390 740 / 0.0 SAND family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence
>Lus10000722 pacid=23149271 polypeptide=Lus10000722 locus=Lus10000722.g ID=Lus10000722.BGIv1.0 annot-version=v1.0
ATGGTCACAGAGTCAGCGAACCGATCTTCTTCCCACAATCCGCCATCGCCAAAGGCCGCGAGAAAACCTAGAAACGGCGGCAATTCGATGTCATCTTCCG
ATTCCAGCTCCTCCTCTTTGGACGGCCAAAACCCAGGTCAGAAATCTCAGCTTCTCGAGGCCCAATTCCAGTCGGCGGTTACTATCGAAGACTCCGATAG
AGAGGAATTAGCATCCGTGAACCATCTCCAGCAGGGAGTGGATGATACGGAGAATGGGGCGGTCGATGATGAATTCGTCAATGTCGAGGAAGACGATCGC
CGTGAGAGCAGCGATCGTGAGGAGAGAAATGCTGTCGAAGAGGCTGGGGATGGGAGTGGAGCTGAAGATTTTGACGGGTGCAGGAGCAATTCGGAGCTGG
AACCGGAGAGTGAAGTTCCGGAAAGTGAGGTTTTCAATGTAGCGGACGCCAGTCGTCGGGAGAGCAACTATCAGGAGGAGATGAATGCAGTTAATGAGGC
TGGGGATGAGAATCGAGTTGAAGAATTGGAGGGGAGTAGGACGATCTCAGAGCTGGAAGTGGAGGCGAAGGAGCCGGAGGGGGGAGATCAGACAAGTGGC
GTTGTCAATGTAGAGGAGAGAAATGCAGTCGACGAGGCTGGGGATGGAGTCGGAGGTTTCGTTTGGAGGCGGACGAATTCGGAGGTGGATGTGGAGGCGG
AGGCGCCGGCGAGTCCGAGCAGTAGTGGATATGCCGGCGAGAGAGGGAGTAGCAGTGGAACTAGCGATTCGAGGAGGGACGGGGAAGCCAGTGAAGATGA
GATACTAGAGGTCGGAAACGATGGCGTTGATGGTGGAGGTGTTGATGGCGCTCTGGACTCTCAAGCTGAATGGACTCCTGGGAAACGGCATGTTAATGAG
GACGATGCTTCAATTTCATGGAGAAAGAGGAAGAAACATTTTTTCGTACTGAGCAATTCTGGGAAACCTATATATTCAAGATATGGGGATGAGCACAAAC
TGGCAGGATTCTCAGCAACCCTGCAAGCCATCATATCTTTTGTGGAGAACGGGGGAGATCGAGTCAAGTATGTCAGGGCAGGCATGCACCAGGTGGTTTT
CCTAGTCAAAGGACCAATCTACCTTGTATGCATCAGCTGTACTGAAGAACTGTATGAGTCGCTCAATGGACAACTGGAGCTTCTCTATGGTCAGATGATT
CTCATTCTGACCAAGTCGTTGAATAGATGCTTTGAGAAAAACCCGAAGTTTGACATGACACCTTTGCTCAGAGGAACGGATGATGTCTTCTCTTCTCTGA
TCCACTCGTTTAGCTGGAATCCAGCCACGTTTCTTCATGCATACACGTGTCTTCCTCTTCCTTACGCGACAAGGCAAGCTGCAGGTGCTATATTGCAAGA
TGTTGCGGATTCTGGTGTCCTCTTCGCGTTATTAATGTGTAAACATAGAGTTGATACTTACCTGATATTGCTAACAACCCGTTCAGATGCGTTCTACCAT
TTGAAAGATTGTCGGATTCGTGTGGAAACGGTTCTTGTGAAGTCAAATGTTCTTAGCGAAGTTCAGAGATCCGTACTAGACGGTGGAATGCGCGTTGAGG
ATTTATCCGGCGTTCCGTTGTTACAGGCTGGATCTACTTCTCGTGCAGGACAGGATAACGTAGCGATTCAGACTCCAGAAAGAATACGGGAGCCGTGTGT
TGTTGGCATGGGCGGTCCTGCTGGACTCTGGCATTTCTTGTACCGTAGCGTATATCTCGATCAGTATGTATCTTCCGAGTTTTCGTCACCGGTTAATACT
CGGCAACAACAGAAGAGATTATACAGAGCATACCAGAAGCTTTATGTCTCAATGCATAGCAAAGGAACCGGACCTCACAAAACCCAGTTCCGAAGAGACG
AGAGCTGCGTTCTACTCTGTTGGGTGACCCCAGATTTCGAACTGTACGCAGCATTCGATCCACTTGCAGACAAGGCTTTGGCGATCAAGACGTGCAACAA
GGTGTGCCAATGGGTGAAAGATGTAGAGAATGAGATCTTTCTGATGGGAGCTAGCCCCTTCTCCTGGTGA
AA sequence
>Lus10000722 pacid=23149271 polypeptide=Lus10000722 locus=Lus10000722.g ID=Lus10000722.BGIv1.0 annot-version=v1.0
MVTESANRSSSHNPPSPKAARKPRNGGNSMSSSDSSSSSLDGQNPGQKSQLLEAQFQSAVTIEDSDREELASVNHLQQGVDDTENGAVDDEFVNVEEDDR
RESSDREERNAVEEAGDGSGAEDFDGCRSNSELEPESEVPESEVFNVADASRRESNYQEEMNAVNEAGDENRVEELEGSRTISELEVEAKEPEGGDQTSG
VVNVEERNAVDEAGDGVGGFVWRRTNSEVDVEAEAPASPSSSGYAGERGSSSGTSDSRRDGEASEDEILEVGNDGVDGGGVDGALDSQAEWTPGKRHVNE
DDASISWRKRKKHFFVLSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDRVKYVRAGMHQVVFLVKGPIYLVCISCTEELYESLNGQLELLYGQMI
LILTKSLNRCFEKNPKFDMTPLLRGTDDVFSSLIHSFSWNPATFLHAYTCLPLPYATRQAAGAILQDVADSGVLFALLMCKHRVDTYLILLTTRSDAFYH
LKDCRIRVETVLVKSNVLSEVQRSVLDGGMRVEDLSGVPLLQAGSTSRAGQDNVAIQTPERIREPCVVGMGGPAGLWHFLYRSVYLDQYVSSEFSSPVNT
RQQQKRLYRAYQKLYVSMHSKGTGPHKTQFRRDESCVLLCWVTPDFELYAAFDPLADKALAIKTCNKVCQWVKDVENEIFLMGASPFSW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G28390 SAND family protein (.1) Lus10000722
[exp]
0 1
AT5G49900 Beta-glucosidase, GBA2 type fa... Lus10002950
[exp]
11.7 0.7431
AT1G04760 ATVAMP726 vesicle-associated membrane pr... Lus10038342
[exp]
13.4 0.7616
AT3G55830 EPC1 ECTOPICALLY PARTING CELLS, Nuc... Lus10031680
[exp]
13.6 0.7600
AT3G13340 Transducin/WD40 repeat-like su... Lus10041268
[exp]
22.3 0.7318
AT1G53910 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) Lus10037448
[exp]
25.1 0.7409
AT4G36190 Serine carboxypeptidase S28 fa... Lus10041817
[exp]
26.5 0.7404
AT1G61250 SC3 secretory carrier 3 (.1.2) Lus10018455
[exp]
29.3 0.7042
AT4G17980 NAC ANAC071 NAC domain containing protein ... Lus10030978
[exp]
30.9 0.7228
AT1G53910 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) Lus10013186
[exp]
30.9 0.7400
AT5G46170 F-box family protein (.1) Lus10023298
[exp]
35.2 0.7220

Lus10000722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.