Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72100 252 / 8e-78 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT1G22600 135 / 7e-35 Late embryogenesis abundant protein (LEA) family protein (.1) AT3G62580 54 / 4e-08 Late embryogenesis abundant protein (LEA) family protein (.1) AT4G21020 51 / 6e-07 Late embryogenesis abundant protein (LEA) family protein (.1) AT5G44310 49 / 4e-06 Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021473 [exp] 770 / 0 AT1G72100 305 / 2e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10041310 [exp] 121 / 7e-31 AT1G72100 144 / 9e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10037401 [exp] 105 / 2e-25 AT1G72100 127 / 5e-34 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10015427 [exp] 56 / 2e-08 AT4G21020 99 / 1e-24 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10025037 [exp] 54 / 4e-08 AT3G62580 341 / 7e-121 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10010016 [exp] 54 / 5e-08 AT3G62580 340 / 3e-120 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10014004 [exp] 50 / 2e-06 AT4G21020 99 / 2e-24 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10035586 [exp] 50 / 2e-06 AT2G36640 211 / 5e-64 embryonic cell protein 63 (.1) Lus10008638 [exp] 47 / 3e-05 AT2G36640 249 / 4e-77 embryonic cell protein 63 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197800 [exp] 54 / 3e-08 AT3G62580 352 / 6e-125 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000723 pacid=23149277 polypeptide=Lus10000723 locus=Lus10000723.g ID=Lus10000723.BGIv1.0 annot-version=v1.0 ATGACCAACATTTTTGCAATCTGCCTTGTGCTCACCACAATGCTGGCCGCCGATATCTGGTCTCCTCCTCCGGCACGATCGACGGTAGCCACCCCTGGTG ATCATCAAGACGTCATAGTGAAGGAAGGTCACCGTGTCGTGGTCGTTGAGACTTTCGACGACCAGGGCCACCACAACACCAAAGTGTCCATCTCCCCATC CAAAGAGGGCGAGGACGATGAATCGGGATCCGCTCTGCCGATTTTCGGCAAACCGCATCACACTAGTAGCGATGACACCACCCGTTCGCCAAGGGAGCTC GTGTGTGATTCCCTTGGGAAATGCACACACAAGATAGCTAAGACCATCGGTAACGCTAAGGATCGAGTCTCGGGGAAGGCTTCAGAAGTGGCCGAGGGAG CCAAACATGGAATATCCGACACGGTGCATCAAGCCTCGGGGATGGCCTCGGGGGCTAAACACGGAATCTCCGGCTCTGCAGAGAAAGCGGCAGAGCTTGC TCACGAAGCTAAAGATAAAGTGAGTAGAGCTACGCAGCAAGCTACTGGGAAGGCTACAGAGTATGCACATCACACGAAAGACTGTGTCTCTGAAACCGCG GAGATGGCCTCCGAGAAGGCGTCTGAGGTTGCTCACGGTGCCAAAGACCGGATCTACGAAACCGTGGAGAAGGCTTCTGGAAAGGCGTCGGAAGCATTCG ACAAAGGAAGCGACTTTGCGTCCCAAGCTAAAGACAAAGCAGGGGAGGCAGCAAAAGGAGTATACTCCAAAGCCAAAGATTCGGCTGCCCGGTCAACCGA ACAGGTCAAAGAGGCGGTGACAGATGCCTCGGACAAGGCGAAATCCGCGGCCAAATCAACAAAGGACGTTGGGAAAACCATAGGCAAAGACGTGACACGT AACGTCACAACAGCGACGAAAAAACCACTAACCACGATTGCCGGATCGGTGGGTTCGTGGTTGAAGGGAATGCTGAGCGTGCTGAACGTGTTGGGTTTAG CCACAGCTTACGGGATGAGCGTGTGGGTGACTTTCATTTCGAGCTACGTGCTGGCCTCGGTCCTGCCGAGGCAGCAGCTAGGAATGGTGCAGAGTAAAAT ATACCCTGTTTACTTCAGGGCGCAGAGCTTGTCGGTCGGGGTAGCTCTGCTCGCCCATTTGATGAGGCAATGGAGTAACTTGTTGTCTTCAAAGTCCGAA ATGTTGCAGGCGTTCAATCTATTGGTTGCGATCTTGCTCGTCGGTGTTAATGGTCTCTATGTCGAGCCCCTTGCCACTAAGGCGATGTTCGAGAGGTTGA GGATGGAGAAGGAAGAAGGGAGGGGGAGGGAGCAGGAGACGCAGCAGCATCAACTGGCCGATGCAGGGCCAGCCGCTGCAGGAGCTGAGCTGTCCGAAGG GGACAGAGAAGAGGAGACGACGACGACGAGGATGGCGGGGTTGAACGAAAGAGTGAAGAAGATGAACTTGTGCTCGTCCTACCTCAACATTGCGTCGGTA ATGTCGCTCACTTGGCATCTTGTTCATTTGGGACACAACCTCCATGTGGGTTCATCGCAGTGA
AA sequence Show only first row Show all	>Lus10000723 pacid=23149277 polypeptide=Lus10000723 locus=Lus10000723.g ID=Lus10000723.BGIv1.0 annot-version=v1.0 MTNIFAICLVLTTMLAADIWSPPPARSTVATPGDHQDVIVKEGHRVVVVETFDDQGHHNTKVSISPSKEGEDDESGSALPIFGKPHHTSSDDTTRSPREL VCDSLGKCTHKIAKTIGNAKDRVSGKASEVAEGAKHGISDTVHQASGMASGAKHGISGSAEKAAELAHEAKDKVSRATQQATGKATEYAHHTKDCVSETA EMASEKASEVAHGAKDRIYETVEKASGKASEAFDKGSDFASQAKDKAGEAAKGVYSKAKDSAARSTEQVKEAVTDASDKAKSAAKSTKDVGKTIGKDVTR NVTTATKKPLTTIAGSVGSWLKGMLSVLNVLGLATAYGMSVWVTFISSYVLASVLPRQQLGMVQSKIYPVYFRAQSLSVGVALLAHLMRQWSNLLSSKSE MLQAFNLLVAILLVGVNGLYVEPLATKAMFERLRMEKEEGRGREQETQQHQLADAGPAAAGAELSEGDREEETTTTRMAGLNERVKKMNLCSSYLNIASV MSLTWHLVHLGHNLHVGSSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	0	1
					Lus10036703 [exp]	1.4	0.9668
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	2.0	0.9645
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	2.8	0.9360
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	3.2	0.9270
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	4.2	0.9260
					Lus10000348 [exp]	4.2	0.9094
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	4.6	0.9393
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	6.5	0.9147
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	7.7	0.8914
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	8.1	0.8880

Compare expression of checked genes

Lus10000723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.