Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60680 86 / 2e-21 Protein of unknown function, DUF584 (.1) AT3G45210 85 / 2e-21 Protein of unknown function, DUF584 (.1) AT5G03230 76 / 7e-18 Protein of unknown function, DUF584 (.1) AT2G28400 75 / 3e-17 Protein of unknown function, DUF584 (.1) AT4G21970 69 / 4e-15 Protein of unknown function, DUF584 (.1) AT4G04630 69 / 7e-15 Protein of unknown function, DUF584 (.1) AT3G15040 59 / 4e-11 Protein of unknown function, DUF584 (.1) AT1G11700 58 / 1e-10 Protein of unknown function, DUF584 (.1) AT1G61930 55 / 1e-09 Protein of unknown function, DUF584 (.1) AT4G21930 54 / 2e-09 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021474 [exp] 112 / 1e-31 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 92 / 9e-24 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 81 / 2e-19 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10026507 [exp] 75 / 2e-16 AT5G03230 97 / 1e-24 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 69 / 8e-15 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1) Lus10020043 [exp] 69 / 1e-14 AT4G21970 127 / 1e-37 Protein of unknown function, DUF584 (.1) Lus10034190 [exp] 69 / 1e-14 AT3G15040 125 / 9e-36 Protein of unknown function, DUF584 (.1) Lus10040067 [exp] 66 / 3e-13 AT4G21970 98 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 62 / 3e-13 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014100 [exp] 94 / 9e-25 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 93 / 4e-24 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 84 / 8e-21 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 82 / 6e-20 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 69 / 5e-15 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 69 / 6e-15 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 65 / 4e-13 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 64 / 6e-13 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 61 / 9e-12 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 52 / 3e-09 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10000724 pacid=23149276 polypeptide=Lus10000724 locus=Lus10000724.g ID=Lus10000724.BGIv1.0 annot-version=v1.0 ATGGCAGCCAGTAAGAGCTACTTCGCCAGACAGAGCAACTACCGATTCCTCTCCGCCGACCACCACCACCACCACCACACCCACGACTCCTCCGTCTTCG AGCTCGACGAGTCAGACCTCTACGGCCACCACAACCACCACCACCGCTCCGAGTCGCCTGAGTTCCGTATGACCGGGTCAAGGATCAGTCAAAAGTCGTC GTCGGCTGCCATGGTGGTGGCGGCAGGAGGTAACCGCGCCGCCGCGTCGTCCGCCCGCCCAGACAATCGCCGGAGAGATCAGGACGACGAGAATGACGAC GACGTCGTGGGTTTCAACGGCGGCGGCGGTGAGGATTACTTCGACAGAGGTGGAATGAGAGTTCCGCCGCACGAGCTTCTGGCGAGGACGAGGATCGCGT CGTTCTCCGTCCATGAAGGGATAGGGAGGACTTTGAAAGGGAGGGATCTGAGCAGGGTCCGAAATGCAATTTGGGAGAAAACTGGGTTCCAAGACTGA
AA sequence Show only first row Show all	>Lus10000724 pacid=23149276 polypeptide=Lus10000724 locus=Lus10000724.g ID=Lus10000724.BGIv1.0 annot-version=v1.0 MAASKSYFARQSNYRFLSADHHHHHHTHDSSVFELDESDLYGHHNHHHRSESPEFRMTGSRISQKSSSAAMVVAAGGNRAAASSARPDNRRRDQDDENDD DVVGFNGGGGEDYFDRGGMRVPPHELLARTRIASFSVHEGIGRTLKGRDLSRVRNAIWEKTGFQD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45210			Protein of unknown function, D...		Lus10000724 [exp]	0	1
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10020105 [exp]	1.0	0.8860
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	2.0	0.8670
AT5G60680			Protein of unknown function, D...		Lus10021474 [exp]	2.4	0.8298
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	5.3	0.8237
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	5.3	0.8488
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	6.0	0.8588
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	6.7	0.8366
AT4G10810			unknown protein		Lus10022380 [exp]	8.5	0.7470
AT5G13440			Ubiquinol-cytochrome C reducta...		Lus10028416 [exp]	13.8	0.7445
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	13.9	0.8026

Compare expression of checked genes

Lus10000724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.