Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16563 467 / 2e-161 Eukaryotic aspartyl protease family protein (.1) AT5G45120 221 / 3e-66 Eukaryotic aspartyl protease family protein (.1) AT3G52500 157 / 2e-42 Eukaryotic aspartyl protease family protein (.1) AT2G03200 130 / 1e-32 Eukaryotic aspartyl protease family protein (.1) AT3G25700 119 / 7e-29 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 116 / 7e-28 Eukaryotic aspartyl protease family protein (.1) AT3G18490 115 / 1e-27 Eukaryotic aspartyl protease family protein (.1) AT3G61820 108 / 4e-25 Eukaryotic aspartyl protease family protein (.1) AT5G07030 102 / 4e-23 Eukaryotic aspartyl protease family protein (.1) AT5G10770 100 / 2e-22 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008513 [exp] 761 / 0 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 590 / 0 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 565 / 0 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10018286 [exp] 177 / 3e-49 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 152 / 9e-41 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 148 / 3e-39 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 130 / 1e-32 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 115 / 4e-28 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 111 / 3e-26 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158600 [exp] 551 / 0 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 549 / 0 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 209 / 1e-61 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 201 / 1e-58 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 183 / 4e-52 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 174 / 2e-48 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 151 / 2e-40 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 114 / 5e-27 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 113 / 6e-27 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 112 / 5e-26 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10000725 pacid=23140523 polypeptide=Lus10000725 locus=Lus10000725.g ID=Lus10000725.BGIv1.0 annot-version=v1.0 ATGACAAAACCAAACTCTGCAACTCTCATACTCTGTTTCCTCCTCTGTTTCTTCCTCCAAATCTCCACCTCAATTCCCCACCTCCTCCTCCCTCTAACCC ACTCCCTCTCCACTACCCAATTCACCTCCCCTCACCACCTACTCAAATCCACCTCCTCCACCTCCGCTGCACGACTCCGCCGCCAACACCACCACCACCG TCATCGCCAAGTCTCCCTTCCCCTGTCTCCGGGCACCGACTACACTCTCACCCTAACCCTCAACTCCAAAACCCACATCTCTCTGTACCTAGACACCGGA AGCGACCTCGTCTGGCTCCCTTGCCGCCCTTTTGAATGCATCCTCTGCGACGGCGAGACCCAGCTGAACGAAACGTCATTGATCGCCGGAAAACCATCCT CCCCCGCCACCGCCGTCCCTTGTAAATCGGCGGCTTGCTCCGCTGTGCATTCGAGCATACCATCCTCTGACCTCTGCGCAATCGCTGGTTGTGGGTTAGA TTCGATTGAGACTTCCGATTGTGGGAAAGAATTCTCTTGCCCGGAGTTTTACTATGCTTACGGCGACGGGAGTCTGGTGGCGAAGCTTTATACTGACGCC GTTACGTTACCGTTAGCTTCTCCGTCTTTGAGGATGGAGAATTTCACGTTTGGTTGCGCCCATACCGCTCTGGCTGAACCGGTTGGGGTGGCCGGGTTTG GAAGAGGGATTATGTCCTTACCGGCTCAGCTTGCTACTGAATTTCCTCGGTTGGCTAGCCGGTTTTCGTACTGTTTGGTCTCTCACTCGTTCGACTCGGA CAAGGTTCGTAGCCCGAGCCCATTGATTCTTGGGCGGTTCGATGAGAAGGAGGAAAAACGGGTGGGTGGTGGTGATATGACCCGATACGTGTACACTTCG TTGTTGGATAATCCAAAACATCCGTACTTTTACTCGGTCGGGATGGTCGGGATTTCAGTTGGGAAGAGGTACATTCAAGCGCCAAACTTGTTAAAAAGGA TCGATCACGAAGGGACTGGTGGGTTAGTGGTGGATTCAGGTACGACATACACGATGTTACCGAAAAGGTATTATAACGCGGTAGTGACCGAGTTCAATAA CAGAGTCAGTCGGATTCACAAGCGGGCACATGAAGTCGAGGGGAGAACCGGTTTGAGTCCATGCTACTACTACGAAGTCGTATCGAGCGTGCCGAGCATG GTGCTGCATTTTTCCGGGAACAAATCGAGTGTGACGATACCTAAGATGAATTATTTTCACGAGTTTTTGGATGGTGGAGATGATGGGACGGGGAAGGGCA AGAAGAGGAAAGTTGGGTGCTTGACGTTGATGAACGGTGGAGATGAGGCAGACTTGAGAGGTGGGCCTGGGGGTACTTTGGGGAATTACCAACAACAAGG GTTTGAAGTGGTTTATGATTTGGAGAAAGGAAGGATTGGGTTTGGTAGGAGGGAGTGCTCATCCTTGTGGGAAAGCTTGAACCAAGGCTAA
AA sequence Show only first row Show all	>Lus10000725 pacid=23140523 polypeptide=Lus10000725 locus=Lus10000725.g ID=Lus10000725.BGIv1.0 annot-version=v1.0 MTKPNSATLILCFLLCFFLQISTSIPHLLLPLTHSLSTTQFTSPHHLLKSTSSTSAARLRRQHHHHRHRQVSLPLSPGTDYTLTLTLNSKTHISLYLDTG SDLVWLPCRPFECILCDGETQLNETSLIAGKPSSPATAVPCKSAACSAVHSSIPSSDLCAIAGCGLDSIETSDCGKEFSCPEFYYAYGDGSLVAKLYTDA VTLPLASPSLRMENFTFGCAHTALAEPVGVAGFGRGIMSLPAQLATEFPRLASRFSYCLVSHSFDSDKVRSPSPLILGRFDEKEEKRVGGGDMTRYVYTS LLDNPKHPYFYSVGMVGISVGKRYIQAPNLLKRIDHEGTGGLVVDSGTTYTMLPKRYYNAVVTEFNNRVSRIHKRAHEVEGRTGLSPCYYYEVVSSVPSM VLHFSGNKSSVTIPKMNYFHEFLDGGDDGTGKGKKRKVGCLTLMNGGDEADLRGGPGGTLGNYQQQGFEVVYDLEKGRIGFGRRECSSLWESLNQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16563			Eukaryotic aspartyl protease f...		Lus10000725 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	1.7	0.9716
AT3G47710	bHLH	BNQ3, PRE4, bHL...	BASIC HELIX-LOOP-HELIX PROTEIN...		Lus10024241 [exp]	4.9	0.9639
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	6.2	0.9715
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10025730 [exp]	7.4	0.9574
AT2G22590			UDP-Glycosyltransferase superf...		Lus10035951 [exp]	8.3	0.9466
AT1G06980			unknown protein		Lus10042244 [exp]	8.4	0.9582
AT4G33590			unknown protein		Lus10041131 [exp]	9.9	0.9585
AT3G14470			NB-ARC domain-containing disea...		Lus10002609 [exp]	10.2	0.9639
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	10.5	0.9472
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021045 [exp]	11.1	0.9448

Compare expression of checked genes

Lus10000725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.