Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44940 48 / 6e-06 F-box/RNI-like superfamily protein (.1) AT5G44980 47 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G39415 45 / 1e-05 F-box family protein (.1) AT3G58820 47 / 2e-05 F-box/RNI-like superfamily protein (.1) AT1G16930 47 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22720 47 / 3e-05 F-box/RNI-like superfamily protein (.1.2) AT1G69630 46 / 4e-05 F-box/RNI-like superfamily protein (.1) AT3G59210 45 / 6e-05 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G58880 44 / 0.0001 F-box/RNI-like superfamily protein (.1) AT5G44960 44 / 0.0001 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008511 [exp] 647 / 0 AT1G16930 52 / 6e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10000727 [exp] 316 / 2e-104 AT5G02910 54 / 1e-07 F-box/RNI-like superfamily protein (.1.2) Lus10000728 [exp] 300 / 2e-98 AT5G02920 50 / 8e-07 F-box/RNI-like superfamily protein (.1) Lus10000729 [exp] 287 / 2e-92 AT5G02920 49 / 2e-06 F-box/RNI-like superfamily protein (.1) Lus10008524 [exp] 236 / 2e-73 AT1G16930 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008517 [exp] 163 / 6e-46 AT4G00160 55 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004718 [exp] 119 / 2e-30 AT5G60610 51 / 4e-07 F-box/RNI-like superfamily protein (.1) Lus10029587 [exp] 57 / 1e-08 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10006970 [exp] 56 / 3e-08 AT4G03220 74 / 3e-14 Protein with RNI-like/FBD-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 82 / 7e-17 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G098700 [exp] 47 / 2e-05 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.008G050800 [exp] 45 / 6e-05 AT2G39490 264 / 1e-84 F-box family protein (.1) Potri.001G337200 [exp] 41 / 0.001 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000726 pacid=23140530 polypeptide=Lus10000726 locus=Lus10000726.g ID=Lus10000726.BGIv1.0 annot-version=v1.0 ATGGACAGAAAAACGGCGCTAACGGCCAGCCGAACTGTCGACATAATCAGTAGCCTCCCCGACGAGATCCTCAGCCGCATCCTGATCGCCGCCGACCTCG ACCTAAGGTCCTCCACCGAAACCGCCCTCATCTCCAAGCGCTGGCGTTCCCTCTGGAAATCCTCCATCACAAAGCTCCATTTCCATGTACCAACCCGCCC CGACCCCCAACAGTGGGAGAACTTCGTCCGATTCGTCGAAAAACTCCTGTCGATTCGCGGTGAGTACCCCGACACCGATCTAGACGTCCTCTCCCTGACC ACCGACGGCTTGCTGGTCCTGGAAATGTTTGATCTCTTGGGGAAGATTTTCGCCCATGGGGTGGCAAACCGAGCCCGGACGTTCCGGCTTGCTGTAGATT TGAGCCCGAATCGGTATATCCCGCCCAATGTGGACCGGAATTCCTATCGGGTTCCCCCGCCTGGTCTGATCGCCATGTGCGATTCGGTTGAGAACCTCGA GCTCTCACTCTTTGCCAATCTTGACATTCTGAGGGCCTCGACCAACTTCCCAGCCCTCAAAACGCTCCTCCTTGAGGGCTGTCTGCTGAAGCGCTCCTTG TGGACCTCTCGTATGGCTGGCGAGAGAGTATACGATTTCCTGAACCAAGGGTTCCCGGATCTATCTAAGTTGGAGTTGGTCGAATGCGATTTTCAGACTG CTCTCCCGGTCCACATTTTGGGTGGCGATAATTTGGTTGAGCTCGTGATGGTGTGGCCTAGGGAGCCCCGAAACAACGGATTTCGTCATAAGATGTTCGT TCGTGCTCCCCGGGTCAAGTCCTTCACGTGCAAGGAAATGAAGGCCAATTGGCTTAAGAGCTTCGAGCTCCCTTTGTTGGAGTGTTTGGATATCGATGCC TATGTCCCCTTGAAGGTAGGGAGCGATCGAAGAAACACATGTCGGAAGGTCTTTCGTCACCTTCGAAAGTTTACTGGTTTGAAGCGTGTGAAGTTGCATC CTAGAACAATCAAGGCGCTTACAATGGTTCCCGGTCTACTCGAAATAGAAGACTCTCCATTCAAGAGAATGGAATGCGTTGAGTTCCACAACAGTGGCAG TCTCCTATCGAACCGTAGAGTTTTCAACGCTCTGGTCAGTTACTTCTTCGACGATTGCATTCGAGGAAGAACTGCTCTCTTCGACCGGATCCTCGCTCAA ACAGGTGCAGGTGACGACAGCAGCAGCTCGAGGCCGGTGGTCGTGTACAAGAGGGACTTAGCTTGA
AA sequence Show only first row Show all	>Lus10000726 pacid=23140530 polypeptide=Lus10000726 locus=Lus10000726.g ID=Lus10000726.BGIv1.0 annot-version=v1.0 MDRKTALTASRTVDIISSLPDEILSRILIAADLDLRSSTETALISKRWRSLWKSSITKLHFHVPTRPDPQQWENFVRFVEKLLSIRGEYPDTDLDVLSLT TDGLLVLEMFDLLGKIFAHGVANRARTFRLAVDLSPNRYIPPNVDRNSYRVPPPGLIAMCDSVENLELSLFANLDILRASTNFPALKTLLLEGCLLKRSL WTSRMAGERVYDFLNQGFPDLSKLELVECDFQTALPVHILGGDNLVELVMVWPREPRNNGFRHKMFVRAPRVKSFTCKEMKANWLKSFELPLLECLDIDA YVPLKVGSDRRNTCRKVFRHLRKFTGLKRVKLHPRTIKALTMVPGLLEIEDSPFKRMECVEFHNSGSLLSNRRVFNALVSYFFDDCIRGRTALFDRILAQ TGAGDDSSSSRPVVVYKRDLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	1.0	1.0000
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	2.0	0.9930
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	2.0	0.9998
AT5G36000			unknown protein		Lus10004013 [exp]	3.0	0.9957
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	4.0	0.9831
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	4.5	0.9817
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Lus10000747 [exp]	4.5	0.9909
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	4.9	0.9881
					Lus10000586 [exp]	6.0	0.9824
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	6.5	0.9864

Compare expression of checked genes

Lus10000726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.