Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02910 47 / 2e-05 F-box/RNI-like superfamily protein (.1.2) AT5G02920 46 / 2e-05 F-box/RNI-like superfamily protein (.1) AT5G03100 43 / 0.0003 F-box/RNI-like superfamily protein (.1) AT1G69630 42 / 0.0005 F-box/RNI-like superfamily protein (.1) AT5G22720 42 / 0.001 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000728 [exp] 437 / 4e-152 AT5G02920 50 / 8e-07 F-box/RNI-like superfamily protein (.1) Lus10000729 [exp] 410 / 4e-140 AT5G02920 49 / 2e-06 F-box/RNI-like superfamily protein (.1) Lus10000726 [exp] 335 / 9e-112 AT5G44940 48 / 7e-06 F-box/RNI-like superfamily protein (.1) Lus10008511 [exp] 323 / 3e-107 AT1G16930 52 / 6e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008524 [exp] 223 / 3e-68 AT1G16930 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008517 [exp] 167 / 2e-47 AT4G00160 55 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004718 [exp] 132 / 1e-35 AT5G60610 51 / 4e-07 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 84 / 3e-17 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10001507 [exp] 78 / 2e-15 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011200 [exp] 95 / 3e-21 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 95 / 3e-21 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 90 / 2e-19 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G024300 [exp] 47 / 3e-05 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000727 pacid=23140534 polypeptide=Lus10000727 locus=Lus10000727.g ID=Lus10000727.BGIv1.0 annot-version=v1.0 ATGGAGCCGGCGGCAGACATCCTCAGCAACCTCCCCGACGAAATCCTCCACCGCATCCTCAAAGCCGCCGATCTCGATCTAAAATCCTTAGCGAGAACCT CAGTCCTCTCCAAAAGATGGCGTCACCTTTGGAAGTCCTCACTTACGAAGCTCCACCTCCCCAACATCCCACTCAAACTGGAAGAATGGGGCACCTTCTC CCAATTCATCGAGAAAATCTTGTCGTTTCGCAACGACACTGAGGACTGCGCCGATCTCGACTCCATCTCCTTGATCACCGACGGCAAGCTGCGTCCCCAC ATGTTCCCTCTCCTGGAGAAGATTTTCGTCCACGGGGTGGAAAACCGGGTCCGGACATTTCGGTTCGGGGTCGGTTCGGGCCAGGTGCTCAGGGTGATGC CGCCCGGCCTGAACGCTCTCTGGAAATCGGTCGAAAATCTGGAGCTCTCTCTGCGCATGTGGGCCGAAGTTTTCAGTAGTTCCGACTACTCAGCGGTCAG GACGCTCCGGTTGTACCGATGTGTGTTGATACTACCACCTCTTGAGAGGGCTCTCGAGTTTGCCGGGGTGCGTTGGATTCAACATATAACTTTGAATCCG AATATGACCAAGTTGGAGTTAATCGAGTGTGATTTCTTCAGGTGCAAGAGCCCGGTCCAAATTTCGAGTAGTCAATTAATTGATCTTGTGATCGTGTGGC CCAGGGAGGCTGACTCCTCACTTCCACCTGACATGATTATCTGTGCCCCTCAAATCAAGTCCTTTACATGTAAGGAAATCAGGCTCTACCTGGTTCAGAG CCTGAAACTCCCGTCGTTGGAGTATTTGGACATTGATGTGTTCTTGCACAACAGAATTTCTGATTCGTCGGAGATGGCGAATGAGGCTAGTTTGGAGGTC TTTCGCTTCTTTCAAAGTCTTGAGGGCTTGAAGCATGTGAAGTTGCATCCTAGTACAATTCTGGCTCTTATAATGGTTCCCGGTTTACTGGAAATGCAAG AGTCGCCCTTCAAGAGCGTGGAATGTGTTGAATTCCACAGTAGTGGCAGTCTCATATCAAACCGTAGAATTTTCAACGCTCTCGTTAGTTACTTTTTCAA CGATTGCATCCGAGGAACTGCTCTCTTCGATCGTATCTTCGCTCAACCGGGCATTGAGGTTCTGTCGTATGCTAGCTCTTGCTTCGTGGTCGATCCCCGG TCTCTTACATCGAAATCTTTGCATACAGGTACAGGCCATGACAGCAGCTCGAGGCCCATGGTCGTCTACAAGCATGACTTACTAGCTTGA
AA sequence Show only first row Show all	>Lus10000727 pacid=23140534 polypeptide=Lus10000727 locus=Lus10000727.g ID=Lus10000727.BGIv1.0 annot-version=v1.0 MEPAADILSNLPDEILHRILKAADLDLKSLARTSVLSKRWRHLWKSSLTKLHLPNIPLKLEEWGTFSQFIEKILSFRNDTEDCADLDSISLITDGKLRPH MFPLLEKIFVHGVENRVRTFRFGVGSGQVLRVMPPGLNALWKSVENLELSLRMWAEVFSSSDYSAVRTLRLYRCVLILPPLERALEFAGVRWIQHITLNP NMTKLELIECDFFRCKSPVQISSSQLIDLVIVWPREADSSLPPDMIICAPQIKSFTCKEIRLYLVQSLKLPSLEYLDIDVFLHNRISDSSEMANEASLEV FRFFQSLEGLKHVKLHPSTILALIMVPGLLEMQESPFKSVECVEFHSSGSLISNRRIFNALVSYFFNDCIRGTALFDRIFAQPGIEVLSYASSCFVVDPR SLTSKSLHTGTGHDSSSRPMVVYKHDLLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	0	1
					Lus10004437 [exp]	1.0	1.0000
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	1.4	1.0000
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	1.7	1.0000
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	2.0	1.0000
					Lus10021739 [exp]	2.2	1.0000
					Lus10039674 [exp]	2.4	1.0000
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	2.6	1.0000
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	2.8	1.0000
AT5G17220		GST26, TT19, AT...	TRANSPARENT TESTA 19, GLUTATHI...		Lus10023511 [exp]	3.7	0.9368
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10023445 [exp]	4.0	0.8890

Compare expression of checked genes

Lus10000727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.