Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02920 44 / 7e-05 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000729 [exp] 512 / 1e-180 AT5G02920 49 / 2e-06 F-box/RNI-like superfamily protein (.1) Lus10000727 [exp] 426 / 2e-147 AT5G02910 54 / 1e-07 F-box/RNI-like superfamily protein (.1.2) Lus10000726 [exp] 313 / 2e-103 AT5G44940 48 / 7e-06 F-box/RNI-like superfamily protein (.1) Lus10008511 [exp] 295 / 3e-96 AT1G16930 52 / 6e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008524 [exp] 207 / 1e-62 AT1G16930 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008517 [exp] 159 / 2e-44 AT4G00160 55 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004718 [exp] 110 / 1e-27 AT5G60610 51 / 4e-07 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 69 / 2e-12 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002239 [exp] 66 / 2e-11 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 89 / 2e-19 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 67 / 3e-12 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 64 / 7e-11 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000728 pacid=23140521 polypeptide=Lus10000728 locus=Lus10000728.g ID=Lus10000728.BGIv1.0 annot-version=v1.0 ATGTCGCCGGCGGCAGACATCCTAAGCAACCTCCCCAACGAAATCATCCACTGCATACTTAACGCCGCTGATCTCGATCTTAAGGCGTTAGCCCGAACCT CAGTCCTCTCCAAACGATGGCGTCACCTTTGGAAATCCTCACTTACGAAGCTCCACTTCCTCAACATCCCACTCAAAGTGGCCGAATGGGGCACCTTCTC CCAATTAGTTGAAAAAATCTTGTCGTTTCGCAACGACGCTGAGTACTGCGCGGATCTCGACGCCCTCTCCCTTACCACCGACGGCAGGCTGCGCCCCCAC ATGGTTCAACTCCTGGAGAAAATTTTCGTCCACGGGGTGGAAAACCGGGTCCGGACGTTTCGGTTCGAGTTCGGTTCGGGTTGTCATATCAAATCGGATC CTTGCTGTCTGACCGGTTTGTCCAGTTTGTCCGCCCTGTTGGGGTCGGTCGAGAACCTAGAGCTCTCCTTCCAGGGTGACATGTCCAAGCTGCTGAGCCC GAACGAGTCTACCGACTTCTCGGCGCTCAGGAAGCTCCGGTTGTCCCGATGTTCGCTGGTATCGAGTTACGAGACGACTGCTGGAGTTTTCGAGGTCAAT CCCGAGACTATATACGTACCGTTCAAAGAGATTCCAAATTTGTACTCGTTGGAGTTGGTCGAGACCGAATTCATGTCGCTTTGCCCTGTCAAAATTTCGG GTACTCAGTTGGAGGAACTAGTAATGGTATTCCCTAGGGAGCCTGATTTCTTCATTCTTTTCGACATGATGATCTCCGCGCCTCGGGTCAAGTCCTTTAC GTGTAAGGAAATCAGGTTGTCTCTGATTAGGAGGGTTGAACTCCCCTCGTTGGAGTGTCTGGATATTGATGTCTTCCTGTATAGCGGGATCTCTTCTTCG TATGGGAAGAAGAAGGTGAGCTTGGAGGTTCTCCGCTTCTTTCGATGTTTCGCAGGCCTGAAGCGTGTGAAGTTACATCCTAGTACAATCACGGCGCTTA TAATGGTTCCTGGTTTCCTAGCAATGCAACCATCTCCGTTCAATCGCGTGGAATGTGTCGAATTCCATAACTGCAGCACTCTGATATCGAACGGCAGAGT TTTCAACGCTCTCGTCAACTACTTTTTCAACGATTGCATCTATGGAACTGCTCTCTTCGATCGCATCTTCGCTCAACCTGGTGCAAGCGAGGACAGCAGC TCGAGGCCGGTGGTCGTGGTCTACAAGAGTGATTTTGCTTGA
AA sequence Show only first row Show all	>Lus10000728 pacid=23140521 polypeptide=Lus10000728 locus=Lus10000728.g ID=Lus10000728.BGIv1.0 annot-version=v1.0 MSPAADILSNLPNEIIHCILNAADLDLKALARTSVLSKRWRHLWKSSLTKLHFLNIPLKVAEWGTFSQLVEKILSFRNDAEYCADLDALSLTTDGRLRPH MVQLLEKIFVHGVENRVRTFRFEFGSGCHIKSDPCCLTGLSSLSALLGSVENLELSFQGDMSKLLSPNESTDFSALRKLRLSRCSLVSSYETTAGVFEVN PETIYVPFKEIPNLYSLELVETEFMSLCPVKISGTQLEELVMVFPREPDFFILFDMMISAPRVKSFTCKEIRLSLIRRVELPSLECLDIDVFLYSGISSS YGKKKVSLEVLRFFRCFAGLKRVKLHPSTITALIMVPGFLAMQPSPFNRVECVEFHNCSTLISNGRVFNALVNYFFNDCIYGTALFDRIFAQPGASEDSS SRPVVVVYKSDFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02920			F-box/RNI-like superfamily pro...		Lus10000728 [exp]	0	1

Compare expression of checked genes

Lus10000728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.