Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02920 46 / 2e-05 F-box/RNI-like superfamily protein (.1) AT5G22720 45 / 8e-05 F-box/RNI-like superfamily protein (.1.2) AT5G02910 45 / 9e-05 F-box/RNI-like superfamily protein (.1.2) AT5G03100 45 / 9e-05 F-box/RNI-like superfamily protein (.1) AT5G22730 44 / 0.0001 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G39415 41 / 0.0002 F-box family protein (.1) AT3G28410 44 / 0.0003 F-box/RNI-like superfamily protein (.1) AT5G02700 43 / 0.0004 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000728 [exp] 531 / 0 AT5G02920 50 / 8e-07 F-box/RNI-like superfamily protein (.1) Lus10000727 [exp] 414 / 1e-141 AT5G02910 54 / 1e-07 F-box/RNI-like superfamily protein (.1.2) Lus10000726 [exp] 302 / 5e-98 AT5G44940 48 / 7e-06 F-box/RNI-like superfamily protein (.1) Lus10008511 [exp] 294 / 6e-95 AT1G16930 52 / 6e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008524 [exp] 196 / 1e-57 AT1G16930 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008517 [exp] 184 / 2e-53 AT4G00160 55 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004718 [exp] 112 / 1e-27 AT5G60610 51 / 4e-07 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 84 / 3e-17 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 73 / 1e-13 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 86 / 4e-18 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 75 / 1e-14 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 52 / 4e-07 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024300 [exp] 48 / 1e-05 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104100 [exp] 47 / 3e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 43 / 0.0005 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G136200 [exp] 42 / 0.0006 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.015G002001 [exp] 42 / 0.0007 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000729 pacid=23140522 polypeptide=Lus10000729 locus=Lus10000729.g ID=Lus10000729.BGIv1.0 annot-version=v1.0 ATGTCGGCGGCCGACATCCTAAGCAACCTCCCCGACGAAATCATCCACCAAATCCTCAACGCCGGCGATCTCGATCTAAAATCCTTGGCTAGGACCTCGG TCCTCTCCAAACGATGGTGTCACCTTTGGAAGTCCTCACTTACAGAGCTCCACTTCCGCAACATCCCACTCAAAGTGGCCGAATGGAACAGCTTCTCCCA ATTCGTTGGAAAAATCTTGTCGTTTCGCAATGATGCTGAGTACCGCGCAGATCTCGGCGCCCTCTCCCTGACCACCGACGGCAGACTGCGCCCCCACATG CTTCAACTCCTGGAGAAGATTTTTGTCCATGGGGTGGAAAACGGGGTCCGGACATTCCGGTTGGCGGTCAGTTCGGGTTGGCACTTCAAACCAGATCCTT CCGATCTGTCTGGTTTGCCCGGATTGTCCGCCCTGTTGGGGTCGGTCGAGAATTTAGAGCTCTCCTTCCGGGGTGATGTTGCCAAGCTGTTGGGGCCGAA CACCAACTTTTCGGGGCTCAAGAAGCTCCGGTTGTCGCGCTGTGTGCTGGCATTGTCTACCGAGACGGCTCCAGGGGTTTTTCAGGTCAATAGTGTGTCT CCATACGCCCCGTTTGAAGAGATGCCAAATTTGAACAGCCTGGTGCTGATCGAGACCGAATTAAGGGCCATTGATGGCCCGGTCAAAATTTCATGTAGTA AGTTAGTGGATCTGGTGATGGTATTCCCTAGGGATCCTGAAGATTTCTTCGTTCTTCCGGCCATGATAATCTGTGCGCCTCAGGTCAAGTCCTTTACGTG CAAGGAAATGAGGATGCGTATGATTAGGAGTGTGGAACTCCCGTCATTGGAGTGTCTGGATATTGATGTGTTTTTGGATAGCGGGTTCTCTTTTTGGTCA GACAAGGAGGAGGAAAGCTTGGAGGTTTTCGGCTTCTTACGATGCTTTGCAGGCGTGAAGCGTGTGAAGTTGCATCCTAGTACAATCACGGGGCTTATAA TGGTTCCCGGGCTCCTAGAAAGGCAAGAATCTCCGTTCCAGCGCATGGAATGCGCAGAATTCCACAACTGTGGCACTCTCATATCGAACAGTGGAGTTTT CAACGCTCTCGTCAACTACTTTTTCAACGATTGCATCCATGGAACTGCCCTCTTCGACCGTATCGTCGCTCAACCGACCGGCAGCCCCTGGCCCTCTTCC GGACCACCGACGGCAGGCTGCATCCCCACATGTTCCCTCTCCCGGAGAAGATGGGGGTGGACGAACCGGGTCCAGACTTTTCAGTTTGCGGTCGGTTCGG GCTGGGTGCTCAGAATCGTCCCGCCCGGTCTGCCCGCTCTATGCGTATCGGTCGAAAATCTCGAGCTATCCGTGCGGAGTGAAGTTTTAAGGGTGCTGCT CGACGACTATACCATCAAGTCCAACTACTCAGCGTTCAGGACGCTCCGGGTGTACTGA
AA sequence Show only first row Show all	>Lus10000729 pacid=23140522 polypeptide=Lus10000729 locus=Lus10000729.g ID=Lus10000729.BGIv1.0 annot-version=v1.0 MSAADILSNLPDEIIHQILNAGDLDLKSLARTSVLSKRWCHLWKSSLTELHFRNIPLKVAEWNSFSQFVGKILSFRNDAEYRADLGALSLTTDGRLRPHM LQLLEKIFVHGVENGVRTFRLAVSSGWHFKPDPSDLSGLPGLSALLGSVENLELSFRGDVAKLLGPNTNFSGLKKLRLSRCVLALSTETAPGVFQVNSVS PYAPFEEMPNLNSLVLIETELRAIDGPVKISCSKLVDLVMVFPRDPEDFFVLPAMIICAPQVKSFTCKEMRMRMIRSVELPSLECLDIDVFLDSGFSFWS DKEEESLEVFGFLRCFAGVKRVKLHPSTITGLIMVPGLLERQESPFQRMECAEFHNCGTLISNSGVFNALVNYFFNDCIHGTALFDRIVAQPTGSPWPSS GPPTAGCIPTCSLSRRRWGWTNRVQTFQFAVGSGWVLRIVPPGLPALCVSVENLELSVRSEVLRVLLDDYTIKSNYSAFRTLRVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02920			F-box/RNI-like superfamily pro...		Lus10000729 [exp]	0	1

Compare expression of checked genes

Lus10000729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.