Plant FIBer expression Database

Lus10000730 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16530 129 / 7e-34 Family of unknown function (DUF577) (.1)
AT2G03010 61 / 1e-10 Family of unknown function (DUF577) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008510
[exp]
289 / 1e-93 AT4G16570 503 / 3e-169 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G123200
[exp]
185 / 1e-58 AT4G16530 118 / 3e-30 Family of unknown function (DUF577) (.1)
PFAM info
Representative CDS sequence
>Lus10000730 pacid=23140531 polypeptide=Lus10000730 locus=Lus10000730.g ID=Lus10000730.BGIv1.0 annot-version=v1.0
ATGGGAGGCCACGGAGGTCTGAACATTCTCCCTCAGAAGCGATGGAACGTTTACAGAGAAGACAATCGAGCGAAAGTCCGGAAGGACGAGGAAGCGGCGG
CGAAAGAGGAGCAGCTCAAGCGCGAACAGTCAAGGAAGAGAGACACCGAGTTCCGCCTCGAACAGCTCCGGTCTGCCCGCGGATTAGCTCCGATCATCAA
ACCTCCTGCTGCGGAGGAGGAATCAAAAGCACAGGAGTCAGAGCAACAAGAGCAAGTTGCGAAGTTATCTTCTGAATCGGATTGCAAAGACGATGGAAGA
CACATCAACCTCTTCGAAGGGATCAAGATCTTCGATCCGATTTTCATGAAGTCAGGCGCGGAGAGTGATAGGAAGAAGAAGAAGGAAGGAGACGACGGAG
AGAAGGACCGGAAGAGGAAGAGGCCGAAGAAGGAGGAGGAGGTTAGGGTCGTCACGGCGGAGGATGAGAAGTTCAGGTTAGGATATGGACTCGCCGGGAA
AGGAGTTAAGACGCCGTGGTACTTGGAGAAGAAGTCGGATAAGGTTGAAAAAGGCGTCGATGAAGGTTCCAGAAAAGGTAATGACGAATGGAAGAAGAGC
GCGGAGAAGAAGAAGAAGAAGACAGTGGAGGAGTTGAGAGAGGAGAGGTTGGAGAGGGAGAAGGTCGAGAAGGAGAGGCAGAGAGCTGTGTTGGCGGAGC
AGAGCCGCAGAGATGGCGGATTCTCCAGAAGAAGGTAA
AA sequence
>Lus10000730 pacid=23140531 polypeptide=Lus10000730 locus=Lus10000730.g ID=Lus10000730.BGIv1.0 annot-version=v1.0
MGGHGGLNILPQKRWNVYREDNRAKVRKDEEAAAKEEQLKREQSRKRDTEFRLEQLRSARGLAPIIKPPAAEEESKAQESEQQEQVAKLSSESDCKDDGR
HINLFEGIKIFDPIFMKSGAESDRKKKKEGDDGEKDRKRKRPKKEEEVRVVTAEDEKFRLGYGLAGKGVKTPWYLEKKSDKVEKGVDEGSRKGNDEWKKS
AEKKKKKTVEELREERLEREKVEKERQRAVLAEQSRRDGGFSRRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G16530 Family of unknown function (DU... Lus10000730
[exp]
0 1
AT1G17180 ATGSTU25 glutathione S-transferase TAU ... Lus10019480
[exp]
2.0 0.8691
AT2G17350 unknown protein Lus10013847
[exp]
2.4 0.8644
AT5G51190 AP2_ERF Integrase-type DNA-binding sup... Lus10032499
[exp]
3.5 0.8599
AT1G07250 UGT71C4 UDP-glucosyl transferase 71C4 ... Lus10039037
[exp]
4.5 0.8510
AT2G18470 AtPERK4, PERK4 proline-rich extensin-like rec... Lus10014318
[exp]
5.7 0.7849
AT3G16175 Thioesterase superfamily prote... Lus10006837
[exp]
6.6 0.8513
AT4G24020 NLP7 NIN like protein 7 (.1) Lus10001810
[exp]
10.1 0.8092
AT1G02070 unknown protein Lus10009267
[exp]
11.3 0.8476
AT1G56423 unknown protein Lus10029844
[exp]
12.0 0.8502
AT3G58630 Trihelix sequence-specific DNA binding ... Lus10015281
[exp]
12.7 0.8012

Lus10000730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.