Plant FIBer expression Database

Lus10000731 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47580 525 / 2e-177 ASG7 ALTERED SEED GERMINATION 7, unknown protein
AT4G17250 523 / 5e-177 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008508
[exp]
1224 / 0 AT4G17250 583 / 0.0 unknown protein
Lus10004355
[exp]
828 / 0 AT4G17250 697 / 0.0 unknown protein
Lus10028936
[exp]
626 / 0 AT4G17250 525 / 3e-179 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G110700
[exp]
648 / 0 AT5G47580 697 / 0.0 ALTERED SEED GERMINATION 7, unknown protein
Potri.001G123100
[exp]
636 / 0 AT5G47580 725 / 0.0 ALTERED SEED GERMINATION 7, unknown protein
PFAM info
Representative CDS sequence
>Lus10000731 pacid=23140532 polypeptide=Lus10000731 locus=Lus10000731.g ID=Lus10000731.BGIv1.0 annot-version=v1.0
ATGGAGGATTGCAGCGCAGGAGGGAGCCTGAATTCGGCCAACTACACATCACCACTACCATGGATAGGATTGTATGTAGCAGCAGCGTCGACAGCCTGCG
CGATCGCCATGGCGATGGACCTCTTCCATGCCTTTCGAAACAGAAACTTCTGGTTCCCAACAAAGTACTTCTCCATCAACGCCACTTCCTTGGCCGTGAT
CATAGCTGCAGTCAAGTTCTCGGTCGATCTCAACACGCCCATGCCTAGCCGAGTCGACCAGCTCTCCAAGCTCAGCAGTGGGGTGCTGGTCTGCGTGGCG
ATTGCAAACTCCATGCCGTCTTTAGGTACCGTGAAGAACAAGGAAGTCATGATGAACGTGATCGCTTTTACGATTCTGGTCCTTACTGTTTTCATCAACA
TTGCGATACAGTTGGGGACTGGAGTGATCTACGCCTGCTGGGAAGAGCATGTTGTGGTGATGTCGCTTATGGCTGCTATGCTGATGATCTTGGCGGGGTC
TGGTTTGGCTGTGCCGAAGATGAAGGCAGAGTTAGAGGTCAAGTACAGGAAGAGATATGAACTGGCATTGAGAGAAGGGACAACGACCAAGGATATGAGA
AAAACACCTGAGGAACTGAAGGATGATCTGAGGAAGTTTTGGATAATGGCGCATAGTAGCGACCCGCAATTCGTGCTGGGGCGTTCGGCCACGTGTACTG
CCTCGGGCGCTCTGTGTATACTCGGCGCCATGGTTCTAGCGGAGGCCATGTTGAGGTCGTTTCTTGTGATGCAGGTTTGTTCAGGGGAGTCTGACTACAA
GTGGTCAACCAGCTTAGTCCTGGTTTCACAGACCGTGGCGGTTGTGATCGGTAGTGTTGCGCCAGCTATTAAGTGGTTTAACTTCTGTCGGAGGGAAAGC
GGCGGAGGAGGAAGGTATTTCAAAGTGGAGAAGTACTGGATTCAGTATTTGGTGGAGATCAAAGAGTGTCCATTCATACACATCAAGAGCGAGCTATTTC
GGAGACTTGCTCATCGCGTGAAGAGCAGAATGCTGGATGCGTGTATTGGAGTGCAGATCGCAATCGTAACAGGATGCAAACTGATCCAGTTCGTCTCCAT
CGTCTTTGTCGGCAGATCTCTAAAGAAGTTAAACAAGTTGTTATCAAGTAACGATATTAATCCAGAGAGAAACAACAGTAGTATCGACCTAAGCCGATTT
GTTCTGCATCTGGAAGGCGAGGAAGAGCTTGTTGAAGTAACAATGAGGAAGAGCTCTAATGCTACAGATCACTGGATGCAAAGGGGGAAAACAAGACAGC
CAAAACATCTAACTGACCTGTTGGGAAATGCAACCTTAGGTTTCAAGGGAGTACGAGAATTGGCATTCGAGAACTCAGTTAGCCTGGAAGGTGAAGAACC
TCCTCCGCGATGCTGCTGTTGGTCTCTTCCGATAGTAACTCTGACAGCAATCGCAGTTGCACTCCCGAATGTCAGCAGTTGTGCAGTTCAAAACCTGTTA
CACGGAGTTCACGAGGGATTTGTGTATGTCAATCTCGTCGAAGACAACCAGGAGGATAGCAGACAAGATCTTGCTACTACTACTAAAGCGAGAATAGCTG
CACATCGTGTGTGGTCAAGTGTCGACATTTACAATAAATGGTACAATATAGATCTTCGTAACCTGTCCGTAAAATCCCAATCCACCAGGAAAGTACTTCA
AGAACTTGCTGAAGCTGGAAAGAGCATGCTTGCAGACTGTAGGAAGAAGAAGAACAGCAACACTTTAAAGTGGAACGCCAAGCGAGTCGCAGCCAACTCC
ATGTACAGAGTTAGCAGCACGATTCTTCTGCGAAAATGTCACACCAACAACAGCAATGAACCTGATTCGGGGGAGAGACTGTTCGGGGCAGTAGCTGAGA
TGATCTCGGACGTATTGGCAGCTTGTCTGACTAACTTGAGACCAGTAATATTCTGCAAGTGTCTGAAGAGCACAATCGAAGAGAGGAAATTCAAAGTAAG
GGAAGCAGTCTACCTCCTTGGTGAGACCGAAGAGATAGTGAAACTCCTCGACCAAAGCTCGATCTCCGTCGTCTACCCAGACAAGGTCACGAACATCGAT
AGCTGGCTTTCACTACAAACTCAATAG
AA sequence
>Lus10000731 pacid=23140532 polypeptide=Lus10000731 locus=Lus10000731.g ID=Lus10000731.BGIv1.0 annot-version=v1.0
MEDCSAGGSLNSANYTSPLPWIGLYVAAASTACAIAMAMDLFHAFRNRNFWFPTKYFSINATSLAVIIAAVKFSVDLNTPMPSRVDQLSKLSSGVLVCVA
IANSMPSLGTVKNKEVMMNVIAFTILVLTVFINIAIQLGTGVIYACWEEHVVVMSLMAAMLMILAGSGLAVPKMKAELEVKYRKRYELALREGTTTKDMR
KTPEELKDDLRKFWIMAHSSDPQFVLGRSATCTASGALCILGAMVLAEAMLRSFLVMQVCSGESDYKWSTSLVLVSQTVAVVIGSVAPAIKWFNFCRRES
GGGGRYFKVEKYWIQYLVEIKECPFIHIKSELFRRLAHRVKSRMLDACIGVQIAIVTGCKLIQFVSIVFVGRSLKKLNKLLSSNDINPERNNSSIDLSRF
VLHLEGEEELVEVTMRKSSNATDHWMQRGKTRQPKHLTDLLGNATLGFKGVRELAFENSVSLEGEEPPPRCCCWSLPIVTLTAIAVALPNVSSCAVQNLL
HGVHEGFVYVNLVEDNQEDSRQDLATTTKARIAAHRVWSSVDIYNKWYNIDLRNLSVKSQSTRKVLQELAEAGKSMLADCRKKKNSNTLKWNAKRVAANS
MYRVSSTILLRKCHTNNSNEPDSGERLFGAVAEMISDVLAACLTNLRPVIFCKCLKSTIEERKFKVREAVYLLGETEEIVKLLDQSSISVVYPDKVTNID
SWLSLQTQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G17250 unknown protein Lus10000731
[exp]
0 1
AT3G07310 Protein of unknown function (D... Lus10038208
[exp]
1.4 0.8796
Lus10039608
[exp]
2.0 0.8120
AT1G58848 Disease resistance protein (CC... Lus10028076
[exp]
3.5 0.8648
Lus10007992
[exp]
5.5 0.8448
AT1G73320 S-adenosyl-L-methionine-depend... Lus10031894
[exp]
6.7 0.7410
AT4G28240 Wound-responsive family protei... Lus10033728
[exp]
14.8 0.7839
AT1G71340 AtGDPD4 glycerophosphodiester phosphod... Lus10013777
[exp]
17.1 0.7982
AT5G49650 XK2, XK-2 XYLULOSE KINASE 2, xylulose ki... Lus10028235
[exp]
18.3 0.8023
AT1G61820 BGLU46 beta glucosidase 46 (.1.3) Lus10018353
[exp]
23.2 0.7635
AT3G53810 Concanavalin A-like lectin pro... Lus10040773
[exp]
30.0 0.7428

Lus10000731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.