Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16510 314 / 1e-109 YbaK/aminoacyl-tRNA synthetase-associated domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008505 [exp] 400 / 4e-143 AT4G16510 298 / 9e-103 YbaK/aminoacyl-tRNA synthetase-associated domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111100 [exp] 339 / 4e-119 AT4G16510 346 / 7e-122 YbaK/aminoacyl-tRNA synthetase-associated domain (.1) Potri.008G135980 [exp] 336 / 7e-118 AT4G16510 342 / 2e-120 YbaK/aminoacyl-tRNA synthetase-associated domain (.1) Potri.001G122501 [exp] 73 / 1e-15 AT4G16510 0 / 1 YbaK/aminoacyl-tRNA synthetase-associated domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04073 [flax] [poplar] tRNA_edit Aminoacyl-tRNA editing domain
Representative CDS sequence Show only first row Show all	>Lus10000734 pacid=23140524 polypeptide=Lus10000734 locus=Lus10000734.g ID=Lus10000734.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCCGCAGAACTGGCGGAGCTGGAGCGAGTCCAGACCGGAACCCTCCATCCGACATCCAAACTTGAAGCCGCTATCCATGTCAACAACGACG GCACTCGACCTCACGAGCTGCCAACGACGGCCTCCGCTACGACGGAAGACCGTTTATCCGCGATTCTCCGGTCTAATGGCGTCAGCGACTTCGCCTTCAA ACGAGTCGCTTCGGATTACTACGACTGGCCTTATGAATCCCGGCGTGACGTCCTCGGCGCTGCCTCGATTGATCACCTCTGCAAGAGCATCGTACTGGTT AACACTCGGGCGCCATCCGATGTAATTGACTGTACTGATCGCAACAACTCTAAGTATTACATCGTTGTTGTTCAGTATACAGCTAGGTTCAATGCTGAAT CTGTTAGAAGCTATCTGTATGCACTGAATGAAGGCAAGGTAGCCAAGAAGAAATTCAACCTGAGGCTTGCGCCAGAAGAAACGTCATTCGAGTTAACTGG ATATGGACACAATGCAGTAACATGTGTCGGCATGAAAACAGACATACCGGTGATTCTGGACGAGGCAATCGTGAAACTTGCTCCAGATTTCATCTGGTTA GGCGGCGGCGAGGTTGATCTCAAGCTCGGAATACGAACCTCCGAATTTGTCAATGCTGTTAAGCCTTTCATCTTTAGCTGCAGTGGTAGTTCATGA
AA sequence Show only first row Show all	>Lus10000734 pacid=23140524 polypeptide=Lus10000734 locus=Lus10000734.g ID=Lus10000734.BGIv1.0 annot-version=v1.0 MEEAAELAELERVQTGTLHPTSKLEAAIHVNNDGTRPHELPTTASATTEDRLSAILRSNGVSDFAFKRVASDYYDWPYESRRDVLGAASIDHLCKSIVLV NTRAPSDVIDCTDRNNSKYYIVVVQYTARFNAESVRSYLYALNEGKVAKKKFNLRLAPEETSFELTGYGHNAVTCVGMKTDIPVILDEAIVKLAPDFIWL GGGEVDLKLGIRTSEFVNAVKPFIFSCSGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10000734 [exp]	0	1
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	5.8	0.8341
AT4G33100			unknown protein		Lus10014752 [exp]	10.6	0.7906
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	11.5	0.7845
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10015009 [exp]	15.2	0.7880
AT3G45900			Ribonuclease P protein subunit...		Lus10033275 [exp]	17.3	0.7648
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10018060 [exp]	17.7	0.7447
AT3G14080			Small nuclear ribonucleoprotei...		Lus10008124 [exp]	21.0	0.7817
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10013306 [exp]	23.7	0.7792
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	27.1	0.7686
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	29.5	0.7755

Compare expression of checked genes

Lus10000734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.