Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47570 162 / 9e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008504 [exp] 236 / 7e-82 AT5G47570 162 / 9e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G122200 [exp] 169 / 2e-55 AT5G47570 176 / 2e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000735 pacid=23140527 polypeptide=Lus10000735 locus=Lus10000735.g ID=Lus10000735.BGIv1.0 annot-version=v1.0 ATGGCAGGACGACTAAGCAACGTGGCTTCACGGATCATGGGCGGGAACGGCGTCGTAGTACGATCCACCGCCGCCTCCCTCCGCGGCCGTTCCGGCATGG GTCTACCCACCGGAAAACATATTGTCCCCAACAAACCACTAGAGGTGAACGACGAATTGGTTTGGGACAACGGGACGCCGTTCCCGGAGCCTTGTATCGA TCGAATTGCTGATACTGTTGGAAAGTATGAAGCTCTGGCTTGGTTGTGTGGAGGTTTGAGCTTCTTTGCGTCGTTAGGCTTACTGGCAGTGTGGAATGAC AAAGCATCTAAGACTCCATTTGTAAGTATTTCTAAACAGTTCCTCCTTTTACGTATTAGTAGGCTTCACTCTGTGGAATTGGAACTTGAATCTACTGTTT AA
AA sequence Show only first row Show all	>Lus10000735 pacid=23140527 polypeptide=Lus10000735 locus=Lus10000735.g ID=Lus10000735.BGIv1.0 annot-version=v1.0 MAGRLSNVASRIMGGNGVVVRSTAASLRGRSGMGLPTGKHIVPNKPLEVNDELVWDNGTPFPEPCIDRIADTVGKYEALAWLCGGLSFFASLGLLAVWND KASKTPFVSISKQFLLLRISRLHSVELELESTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47570			unknown protein		Lus10000735 [exp]	0	1
AT5G51960			unknown protein		Lus10041422 [exp]	2.0	0.9013
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	5.9	0.9095
AT3G60540			Preprotein translocase Sec, Se...		Lus10011428 [exp]	8.3	0.8940
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10003170 [exp]	8.5	0.8877
AT4G26310			elongation factor P (EF-P) fam...		Lus10030360 [exp]	10.6	0.8380
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10038496 [exp]	11.2	0.8465
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Lus10041514 [exp]	11.8	0.8457
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10027540 [exp]	12.8	0.8863
AT4G26210			Mitochondrial ATP synthase sub...		Lus10007995 [exp]	14.7	0.8786
AT5G49210			unknown protein		Lus10036792 [exp]	15.7	0.8235

Compare expression of checked genes

Lus10000735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.