Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49601 204 / 2e-56 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008501 [exp] 512 / 1e-167 AT3G49601 209 / 2e-57 unknown protein Lus10034691 [exp] 89 / 6e-21 AT3G49601 61 / 7e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233000 [exp] 299 / 2e-89 AT3G49601 201 / 1e-55 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000736 pacid=23140529 polypeptide=Lus10000736 locus=Lus10000736.g ID=Lus10000736.BGIv1.0 annot-version=v1.0 ATGTATAACGGGATAGGATTACAGACCCCAAGGGGGTCGGGAACTAATGGGCACATACAGACGAACAAGTTCTTCGTGAGGCCAAGGACTGACAAGGTAG CTCATACCTCCAAGGGATTCGGTGACGAACAGGGTACTGCTGGGATCACTAAAAAGCCCAACAAGGACATCCTTGAGCACGACCGCAAGCGGCAGATTCA GCTCAAGCTCGTGGTGCTTGAAGATAAGCTGATTGATCAAGGTTTCACTGATGCTGAGATTGCTGAGAAGCTGGAGGAAGCTCGGGGGATTTTGGAAGCT GCTTCAGCTTTTGAGGAGGCTGATGGATCTGGGGATTCGAAGTATTCCAACACACAATCTCACCAAGTTGCGGCTAGAAAGGAGAAGCAAATGGAGAAAA TGAGGGCTGCTCTCGGAATTCAATCAGCCGATGCCGATAAAGAAGTTGCTGATGATGAGGGACTGTTTACTAATGAGAGGAGTGGTCCAAATGATGGGAA TATGTGGAATGAGAAACCGGAACATGCTTTTCTGGATAGGGAGTTTGAACGGAAGAAAGATGCTCCAGAAGTTCTGGACCTTGAAAAGGATGAAAAGAAG AGAACTACGGGTGCTTCAAAAAGTAAGAAGAAGCATCAGGGTGATACCTCCGATTCTAGTAGCAGTGCGGAGGAGGGTGAACTGGTCCGTGGTAAGCATC GCAAAGGTAGACATGGAAGCAGTGAAGAAGCTGATAGCGAGTCAGGTTATAGAAAGAAGAAACGGGCCTCGAATAAGCATCGGAAGGGCCGTAAACAGGC GAGTGATAGTGATGATTCTGATTCTGCCGATGACACCGACTCTGATGTTGTTAAGGTGAAAAAAACTTCAAACAGGCACAATAAAAGGAGGCGTAGCAGC AGCGATGACTCGTCTGACAGTAAGGATACTGATTCTGACAATGCCAAGAAGAAGAAGAACAATAAGAAGAGCAAACCTAGGAAGTCTAAGAAAATAAGAA GACGCGACAGTGAAAGTGATGATTCTTCTGCCGATGATAGTGACAGAGATGTCATCAGGAATAATGCAAAAGGTGAAACGGAGAAAAGATGGAAGTCTGA TGATAGGAGGCGTGACTTTGAGTCTGATGATGATTCTGGTTCTGACTTTGGGCCCTCCAAACGTAGACTTGCGCAGGCGAGAGATGATGCCAAAACAAGA AAGCGCCATGATTCCGATGATGAATATAATGCTGATGCTTTCGCTAAGGAGGAGAGGATTGAGGATGAAAGGCACTCTAGAGGCAAGCTTGGAAATGACA AAGATGAGATCAGAGATGGCCATCGGAGGGATGGCAGACACGCTAAGGAAGAACGTCACGGCAGAGATGCTAAGGAAGAACGTCACGGAGGAGATGCTAA GGAAGAACGTGGAAGGGACGGGAGAGATGCTAAGGAGGAATGTGGAAGGGGCGGCAGAGATGCTAAGGAAGAACGTGGAAGGGACGGCAGAGATGCTAAG GAAGAACGTGGAAGGGACGACAGAGATGCTAAGGAAGAACGTGGAAGGAACGGCAGAGATGCTAAGGAAGAACGTGGAAGGGACAGCAGAGATGCTAAGG AAGAAAGTGGAAGGGACGGCAGGGACATCCATGACAGAAGAGACAAAAGGGACAGACTTGAAAGTGACAGAAGGGATATTCAGGAGGAAAATGGTAGAGA CAGAGGGGACAAGAGGGAAGAGCTCGGGAGGAGCAGAAGGCACACTAGGGAAGAGTACAGAAATGACAAAGTCGGTGCCAAGGAAGAGCGTCGAAGTGAT AAAGGGGAGATCAGGGAAGAACGTGGAAGAGACAAAATGGAGGTTAGGGAAGATCATGGAAGTGATAAAAGGGAGATCAGGGAAGAACGTGGAAGAGACA AAAGGGAGGTTAGGGAAGACCATGAAAGCAGAGAAGAACGCGGGATAGAGAGAAGGGAGATCAGGGAAGAACGTGCAAGAGACAAAAGGGAGGGTAGGGA GGATCGTGACATCAGAAAAGAACACGAAATGGGAAAAAGGGAGATCAGGGAAGAACGAGGAAGAGACAAGAGGGAGGTTAGGGAGGGTCATGAAAGCAGA AAAGAACACAAAATGGATGAAAGGGAGATCAGGGAAGAACGTGGAAGGGATGAAAGGGACAGCAGAGAAGATCGTGAAACTAGAGCAGAACGCAGAAGGG ATGACAGAGATACAACGGGAGAACGTAGAAGGGATAGGGAGCATGGCAGGGATGAGGATGCTCATAGAATTAGAAGCTACGACAGAGGTGAAGAGCATGG TGAAAAGAGGAAAAGCTATACTGACAAAGATGAAGTTAAAAAACATGGAATTCGAAGAGATGCAAGGGAGGAAGATGAGACAGAAGCTAAAGTTCCAGAG CACGGTCGTTTGCCTTCGTCCAAACGAGCCCGTTATGATGACTCAGATGATGAAGAAGACAGACGCAGAGACAGTCGCCGTGGTCATCGAGATTGA
AA sequence Show only first row Show all	>Lus10000736 pacid=23140529 polypeptide=Lus10000736 locus=Lus10000736.g ID=Lus10000736.BGIv1.0 annot-version=v1.0 MYNGIGLQTPRGSGTNGHIQTNKFFVRPRTDKVAHTSKGFGDEQGTAGITKKPNKDILEHDRKRQIQLKLVVLEDKLIDQGFTDAEIAEKLEEARGILEA ASAFEEADGSGDSKYSNTQSHQVAARKEKQMEKMRAALGIQSADADKEVADDEGLFTNERSGPNDGNMWNEKPEHAFLDREFERKKDAPEVLDLEKDEKK RTTGASKSKKKHQGDTSDSSSSAEEGELVRGKHRKGRHGSSEEADSESGYRKKKRASNKHRKGRKQASDSDDSDSADDTDSDVVKVKKTSNRHNKRRRSS SDDSSDSKDTDSDNAKKKKNNKKSKPRKSKKIRRRDSESDDSSADDSDRDVIRNNAKGETEKRWKSDDRRRDFESDDDSGSDFGPSKRRLAQARDDAKTR KRHDSDDEYNADAFAKEERIEDERHSRGKLGNDKDEIRDGHRRDGRHAKEERHGRDAKEERHGGDAKEERGRDGRDAKEECGRGGRDAKEERGRDGRDAK EERGRDDRDAKEERGRNGRDAKEERGRDSRDAKEESGRDGRDIHDRRDKRDRLESDRRDIQEENGRDRGDKREELGRSRRHTREEYRNDKVGAKEERRSD KGEIREERGRDKMEVREDHGSDKREIREERGRDKREVREDHESREERGIERREIREERARDKREGREDRDIRKEHEMGKREIREERGRDKREVREGHESR KEHKMDEREIREERGRDERDSREDRETRAERRRDDRDTTGERRRDREHGRDEDAHRIRSYDRGEEHGEKRKSYTDKDEVKKHGIRRDAREEDETEAKVPE HGRLPSSKRARYDDSDDEEDRRRDSRRGHRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49601			unknown protein		Lus10000736 [exp]	0	1
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	2.2	0.8796
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	2.4	0.8785
AT3G49601			unknown protein		Lus10008501 [exp]	3.0	0.8408
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	5.2	0.8750
AT1G61730	GeBP		DNA-binding storekeeper protei...		Lus10010076 [exp]	5.5	0.8667
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	6.0	0.8688
AT3G13780			SMAD/FHA domain-containing pro...		Lus10015611 [exp]	6.0	0.8601
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	12.4	0.8498
AT2G44430			DNA-binding bromodomain-contai...		Lus10021861 [exp]	12.6	0.8065
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	20.1	0.7827

Compare expression of checked genes

Lus10000736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.