Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19410 736 / 0 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT5G52860 529 / 0 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 501 / 1e-171 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT1G53270 476 / 9e-162 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT2G13610 473 / 1e-159 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G55090 358 / 3e-114 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G37360 342 / 1e-107 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT2G39350 341 / 1e-107 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55110 340 / 3e-107 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 337 / 8e-107 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008500 [exp] 1114 / 0 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 902 / 0 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 898 / 0 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 500 / 2e-170 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 441 / 6e-147 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 439 / 3e-146 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 350 / 2e-110 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10039304 [exp] 333 / 5e-109 AT5G52860 504 / 8e-177 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 320 / 4e-99 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070100 [exp] 814 / 0 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 509 / 4e-174 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 498 / 8e-170 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 496 / 1e-168 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 493 / 1e-167 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 492 / 8e-167 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 489 / 4e-166 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 345 / 9e-109 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 343 / 3e-108 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 342 / 3e-108 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10000737 pacid=23140525 polypeptide=Lus10000737 locus=Lus10000737.g ID=Lus10000737.BGIv1.0 annot-version=v1.0 ATGCCAGCCTGCTTCAACTCTCCGTCAGATCGGATTGCTGAAGAAGGCGACTCCGCCGTCCTCTACTCCACCGATTCCCCCGATGGGTCCACCACAACTC CCAGCGTCGGTTCCTCCTCCTTCTGCCTTTCCATTCCTCCGCCTCCCTGGCCGACTGCTTCGTACGATCTCACCGTAACAAACCTCTCATTCACTGTCAT TGCATCAAAATCCTCCTTCTGGCGGCCGAGTCCGAACCCGATCAACATCCTGAAATCCGTCTCGTTCCAGGCCATAAGCTCAGAAATCCTCGCCATTGTC GGTCCGAGCGGTACGGGGAAATCCACGCTCCTCAAATTCATATCCGGCAGGGTAAGGAGCTCCGAATTTGATCCAAAATCTGTTGCAATCAACGGCCGGG CAATCTCCACACCTTCTCAGTTGAGGAAGATTTGCGGGTTTGTACCGCAAGAGGATAATTTGCTTCCTCTGCTTACTGTCAGGGAAACGCTAATGTACAG TGCCAAGTTCTGTTTGCGTGAGCTTACCTTGAAGGAGAAGCAAGAGAAAGTTGAAGGGCTGCTATCCGAGCTAGGACTCGTCCACGTGGCGGAAAGCTTC GTCGGCGATGAAGATGTTAGAGGAATCTCTGGCGGAGAGAGGAAGCGGGTCTCCATCGGCGTTGATATGATCTCGGATCCTCCGATCATCATCCTCGACG AGCCGACTTCAGGTCTCGACAGTAGCTCGGCGCTTCAGGTTATCCTGCAGCTTTCTTCCATTGCTAGGGTTAAACAGAGGACGATCGTTATCTCGATTCA TCAGCCGAGTTATCGGATCCTCGAACTCATCCCTAATCTTCTGATCCTCTCTTCCGGCTCCGTCGTTCATAACGGCAGCTTGCGGTCGTTAGAGGATTCG ATTACCGATCTTGGGTTCCGGATCCCACAACAATTGAATCCGATCGAGTTCGCCATGGAAATCATTCAATACCTCGAGGAATCAGCGAAATCACAATCCC TAACCCTAATTCCGCTTGAATCAGAGACAACGACGACATCAATTTGGCAAGACGAATCAACATCTACAAAATCGATGATCAATTTCTCCGAAATTGGCAA CCTCTGCTCCAGATCATGGAAGATCATCTACAGAACGAAGCAACTCCTCGCTGCTCGGACGATGCAAGCAGTAATCGGAGGCTTCTTACTCGGCAGCGTA TACATCAACGTAAAGAAAGACGACGGAGGAATCACACAACGATTAGGCCTATTCGCATTTAGCCTCAGCTTGCTCCTATCCTCCACCGTTGAAGCACTTC CGATCTACCTCCAGGAGCGGCGAGTACTGATGAAGGAATCCTCCAGAGGAAGTTACAAGATCTCGAGCTACATAATCGCCAACACGATCGTCTTCCTCCC ATTCCTCCTCGCCGTTGCCATCCTTTTCTCCGTCCCTGTATACTGGCTCGTAGGACTCAACCCGTCTGCTGCCTCATTCGCGTTCTTCACGCTCACCGTC TGGCTGATTGTCCTGATGGCTAGCTCGCTCGTGATGTTCCTGAGCGCACTCTCGCCGAATTTCATCGTAGGGAACTCGCTCATATGTGCAGTGCTGGGAG CGTTCTTTCTCTTCTCCGGTTACTTCATCCCCAAGGATAAGATACCGAAGTACTGGATCTTCATGTACTATCTTTCGCTGTATAGATACCCGCTCGATTC GCTTCTGACGAACGAGTACTGGGGGATGAGGGAGGATTGTTTCCGGTGGTTACCGGCGGCGGGAGGTGACGGCCGGAGGTGTTTGTTGACGGGGGATGAT GTGCTGAAGAGTAGTGGGCTGGAGAGGGATCCCCGGTGGGAGAACGTTGGGATAATGGTTGGGTTTTTCGTGTTGTATCGGTTTCTTTGTTGGGTTATTC TGGTTCGGAAGGCTGCCCGAACCACTATTTAG
AA sequence Show only first row Show all	>Lus10000737 pacid=23140525 polypeptide=Lus10000737 locus=Lus10000737.g ID=Lus10000737.BGIv1.0 annot-version=v1.0 MPACFNSPSDRIAEEGDSAVLYSTDSPDGSTTTPSVGSSSFCLSIPPPPWPTASYDLTVTNLSFTVIASKSSFWRPSPNPINILKSVSFQAISSEILAIV GPSGTGKSTLLKFISGRVRSSEFDPKSVAINGRAISTPSQLRKICGFVPQEDNLLPLLTVRETLMYSAKFCLRELTLKEKQEKVEGLLSELGLVHVAESF VGDEDVRGISGGERKRVSIGVDMISDPPIIILDEPTSGLDSSSALQVILQLSSIARVKQRTIVISIHQPSYRILELIPNLLILSSGSVVHNGSLRSLEDS ITDLGFRIPQQLNPIEFAMEIIQYLEESAKSQSLTLIPLESETTTTSIWQDESTSTKSMINFSEIGNLCSRSWKIIYRTKQLLAARTMQAVIGGFLLGSV YINVKKDDGGITQRLGLFAFSLSLLLSSTVEALPIYLQERRVLMKESSRGSYKISSYIIANTIVFLPFLLAVAILFSVPVYWLVGLNPSAASFAFFTLTV WLIVLMASSLVMFLSALSPNFIVGNSLICAVLGAFFLFSGYFIPKDKIPKYWIFMYYLSLYRYPLDSLLTNEYWGMREDCFRWLPAAGGDGRRCLLTGDD VLKSSGLERDPRWENVGIMVGFFVLYRFLCWVILVRKAARTTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10000737 [exp]	0	1
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10025281 [exp]	7.0	0.8462
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	9.8	0.8456
AT1G49960			Xanthine/uracil permease famil...		Lus10006134 [exp]	13.9	0.7982
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	15.3	0.7410
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	20.5	0.8251
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	20.6	0.7770
AT5G14230			unknown protein		Lus10036990 [exp]	22.0	0.8219
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	22.4	0.8372
					Lus10033358 [exp]	22.7	0.8187
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	27.9	0.8176

Compare expression of checked genes

Lus10000737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.