Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66580 93 / 4e-25 unknown protein AT3G50800 90 / 4e-24 unknown protein AT2G23690 88 / 3e-23 unknown protein AT4G37240 84 / 8e-22 unknown protein AT1G76600 52 / 4e-09 unknown protein AT1G21010 51 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019659 [exp] 152 / 9e-49 AT5G66580 141 / 4e-44 unknown protein Lus10016785 [exp] 103 / 2e-29 AT2G23690 138 / 4e-42 unknown protein Lus10012442 [exp] 60 / 6e-12 AT1G76600 152 / 2e-46 unknown protein Lus10033761 [exp] 56 / 2e-10 AT1G76600 150 / 1e-45 unknown protein Lus10037249 [exp] 50 / 3e-08 AT1G76600 130 / 4e-38 unknown protein Lus10035664 [exp] 46 / 5e-07 AT1G21010 125 / 4e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130200 [exp] 112 / 5e-33 AT2G23690 174 / 2e-56 unknown protein Potri.007G033400 [exp] 111 / 2e-32 AT2G23690 165 / 7e-53 unknown protein Potri.004G149600 [exp] 89 / 3e-23 AT4G37240 125 / 5e-37 unknown protein Potri.009G110600 [exp] 87 / 1e-22 AT2G23690 112 / 1e-31 unknown protein Potri.009G110700 [exp] 63 / 1e-13 AT5G66580 77 / 2e-18 unknown protein Potri.004G149800 [exp] 62 / 4e-13 AT5G66580 91 / 7e-24 unknown protein Potri.006G105600 [exp] 45 / 1e-06 AT3G03280 63 / 9e-13 unknown protein Potri.012G045600 [exp] 45 / 1e-06 AT1G18290 129 / 1e-38 unknown protein Potri.006G105500 [exp] 45 / 2e-06 AT3G03280 65 / 2e-13 unknown protein Potri.005G259100 [exp] 44 / 5e-06 AT1G21010 186 / 9e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000739 pacid=23166263 polypeptide=Lus10000739 locus=Lus10000739.g ID=Lus10000739.BGIv1.0 annot-version=v1.0 ATGGGAAACTGCAGATCTTCCCAATCGACACGTGTTGCATCCTCGTCGACGGCGAAGCTGATCCTCCCGGACGGCAAGCTCCAAGAGTATGCGTACTCTG TTAAAGCTTCTTATGTGTTACAGATGAATCCGGCGACCCATTTCATCTGCAACGCCGACGAGATGGAGTTCGACGATGTTTTGTCCGCCGTCAACGAGGA CGACGAGCTCCAACCGGGACAGCTCTACTTCGCCCTTCCGGTGAGCTGGCTGAACCACCCTCGGTGCGCGGGCGAAGCCCCCCTCGGCAGCCGGAGGGAG TGGCCGCATTGGCCGTCAAGGCCAGCTCCGCCTTGA
AA sequence Show only first row Show all	>Lus10000739 pacid=23166263 polypeptide=Lus10000739 locus=Lus10000739.g ID=Lus10000739.BGIv1.0 annot-version=v1.0 MGNCRSSQSTRVASSSTAKLILPDGKLQEYAYSVKASYVLQMNPATHFICNADEMEFDDVLSAVNEDDELQPGQLYFALPVSWLNHPRCAGEAPLGSRRE WPHWPSRPAPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66580			unknown protein		Lus10000739 [exp]	0	1
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	2.4	0.8342
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10012654 [exp]	4.2	0.7984
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	5.5	0.8268
					Lus10035120 [exp]	8.7	0.8157
AT5G55150			Protein of unknown function (D...		Lus10007081 [exp]	10.2	0.7452
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	12.6	0.7408
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10003801 [exp]	19.9	0.7614
AT1G73120			unknown protein		Lus10022961 [exp]	20.6	0.8257
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	28.3	0.7372
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	33.1	0.7370

Compare expression of checked genes

Lus10000739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.