Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37210 359 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019658 [exp] 592 / 0 AT4G37210 328 / 2e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G034200 [exp] 436 / 1e-149 AT4G37210 365 / 3e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G130800 [exp] 425 / 3e-145 AT4G37210 343 / 3e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G130800 [exp] 61 / 6e-10 AT4G37210 62 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000740 pacid=23166269 polypeptide=Lus10000740 locus=Lus10000740.g ID=Lus10000740.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGCAGCAGCAACGGCTTCTGGATCGTCCTCGGCAACGATGGTCGACGACCATCCGGTGGTGAGCGCGGCGGGGAATACTTCACTCCACG GTCAAACTTCGATCGAGGCTACAATCGGTTCGAACGCTCTGGGAGGCGCTGAGTCCACTTGCAACAACGACAACAACGGCGGAGGAGGAGAGGCTTTGGC GGTCACTTCCGAAGCCGGTGGAGGTCAAGCGAATAACACACTGGAGTTCGCTGAGGACTTGAAGGAGAGAGGAACCAAAGCACTTAAGGAAGATGATTTC GAGGAAGCCGTTGAGTGCTTCAGCCGCGCCCTTGAAATCAGGGTTAAGCACTATGGTGAACTTGCTCCTGAATGCATCACTGCGTACTATCACTATGGAC GAGCTCTCTTGTTTAAAGCTCAAGAGGAATCTGATCCGTTAGGTGCAATGCCTAAGAAGGAAGACGGAGATTCAAAACAGGTATCTGGTAAAGATGAAGC AGTTAAGAATGCAGCGAACGGTGAATCTTCCACAGCTTCAGCATCTAGCAATGTTCAAGAGGGTGGGAGTTCCAGCCATCAAAAGGAATCGGCAAATGAT GGTGACAAAGAACAGGAAGATGATGAAGAAGAAGGAAGCGACAATGAGGAGACGGCTGAAGCGGATGAGGATGAGTCCGATCTTGATTTGGCATGGAAAA TGCTGGATCTCGCGAGGGCAATTGCCGAGAAGCACTCCGGTGATACGATGGATAAAGTGGATGTGTTATCTGCATTGGATGAAGTTGCCTTAGAGAGAGA GGACATTGAAACATCTCTCGCTGACTACAAGACTTCTTTATCAATCTTAGAGCGCATTGTTGAGCCCGACAGTAGGCTTATAGCTGAATTAAACTTCCGT ATCTGCTTATGTTTGGAAGTCGGATCAATGGCAGACGAAGCAATCCCATACTGTCAGAAAGCTATATCGGTGTGCAAGTTACGTCTGGATCGTCTCATTG CTGAATCAAAGACTTCTTCCGAATCAGCATCAGCAGCAACACCTTCGGCTATCACAGATATGGAGGATGGTATCCAGCAGTCATCCACGGGACCTCTGCC TGAAGAATCTGCATCGGACAAAGAAGCAGAGATAGAAACACTAACTGGACTGTCCGTCGAGCTAGAGAAGAAGCTTGAAGATCTTCATCAGCTTGTAGTG AACCCAAAGTCCATCCTCCAAGAAATCCTGGGAATGGCTAGAGCAAGAGGAGATAATGCTCAGAAGAAGAGTGATGCTTGCCCAGGTCTAGTGAGCTCTT CGCAGATGGCTACTAACAAAAACGGCGGAGATTCGGTGGAGTCTCCTACCGTCTCTGCTGCTCATACGAACGGCGATAAAGGTGGCGTCACAAACTTGGG TGTCGTGGGAAGAGGAGTAAAGCGTGTCCTGATGAGCCCGATCCCTACACAAGCTAGGGCAGCGAAGAAGCCTGCTCTCGAAACCCCGTCTGAGGATGGC AATGCCAGTTAA
AA sequence Show only first row Show all	>Lus10000740 pacid=23166269 polypeptide=Lus10000740 locus=Lus10000740.g ID=Lus10000740.BGIv1.0 annot-version=v1.0 MAEEAAATASGSSSATMVDDHPVVSAAGNTSLHGQTSIEATIGSNALGGAESTCNNDNNGGGGEALAVTSEAGGGQANNTLEFAEDLKERGTKALKEDDF EEAVECFSRALEIRVKHYGELAPECITAYYHYGRALLFKAQEESDPLGAMPKKEDGDSKQVSGKDEAVKNAANGESSTASASSNVQEGGSSSHQKESAND GDKEQEDDEEEGSDNEETAEADEDESDLDLAWKMLDLARAIAEKHSGDTMDKVDVLSALDEVALEREDIETSLADYKTSLSILERIVEPDSRLIAELNFR ICLCLEVGSMADEAIPYCQKAISVCKLRLDRLIAESKTSSESASAATPSAITDMEDGIQQSSTGPLPEESASDKEAEIETLTGLSVELEKKLEDLHQLVV NPKSILQEILGMARARGDNAQKKSDACPGLVSSSQMATNKNGGDSVESPTVSAAHTNGDKGGVTNLGVVGRGVKRVLMSPIPTQARAAKKPALETPSEDG NAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10000740 [exp]	0	1
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	5.8	0.8743
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Lus10008119 [exp]	6.0	0.8733
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	16.2	0.8655
AT3G58930			F-box/RNI-like superfamily pro...		Lus10002820 [exp]	18.8	0.8404
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	20.9	0.8256
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	32.2	0.8546
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034076 [exp]	35.5	0.8099
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	37.3	0.8552
AT1G10180			unknown protein		Lus10040609 [exp]	39.5	0.8354
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10036576 [exp]	39.6	0.8467

Compare expression of checked genes

Lus10000740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.