Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23450 645 / 0 Protein kinase superfamily protein (.1.2) AT5G66790 539 / 0 Protein kinase superfamily protein (.1) AT1G25390 281 / 4e-85 Protein kinase superfamily protein (.1) AT1G18390 275 / 2e-82 Protein kinase superfamily protein (.1.2) AT5G02070 266 / 3e-79 Protein kinase family protein (.1) AT3G53840 259 / 7e-77 Protein kinase superfamily protein (.1) AT5G38210 257 / 1e-75 Protein kinase family protein (.1) AT1G69910 255 / 3e-75 Protein kinase superfamily protein (.1) AT1G66880 259 / 2e-73 Protein kinase superfamily protein (.1) AT1G69730 253 / 4e-73 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019657 [exp] 683 / 0 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032741 [exp] 529 / 2e-179 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011652 [exp] 308 / 3e-99 AT2G23450 337 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 274 / 1e-81 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 271 / 6e-81 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 271 / 1e-80 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 263 / 3e-78 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10036691 [exp] 248 / 9e-73 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10034085 [exp] 244 / 6e-71 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130900 [exp] 792 / 0 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G034500 [exp] 736 / 0 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G130600 [exp] 605 / 0 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G038600 [exp] 597 / 0 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 288 / 1e-87 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.017G118100 [exp] 289 / 4e-87 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 284 / 1e-85 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.015G044750 [exp] 283 / 3e-85 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G097100 [exp] 280 / 1e-84 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.004G096900 [exp] 281 / 2e-84 AT5G38210 557 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000741 pacid=23166259 polypeptide=Lus10000741 locus=Lus10000741.g ID=Lus10000741.BGIv1.0 annot-version=v1.0 ATGATGATCGTCCCTTCCAAATCACAAATCCTGCCTCTTCTGATTCTCGCAGTTTCGATTCTCAATTCTCCAATTACTACGGTTCTCCAAGCAGCGGCAG CCGAATTAACGATCTGCTCACAGTTCTGCGGCGCCGGCGGAGGACGGCAACGCGTTCCGTACCCGTTCGGATTCTCACCAGGATGTCCGATTCAGCTCAA CTGCACGGAGCCGACCGGAGAGATCCACATCGGAGAGTTCCGCGTCCAGAACTTCACCTCCGACGGTGGAATCGTCATCGATCTCCCGGGGAAATGCAAC CGTCCGAAAGAGTCACTATCCTCTCTCTTCGGCCCGAACTTCGCTCCTTCCCGGAGCACCAACCTGCTACTTCAGAATTGCAGCCGGGAGAATTCCAGCG GTGGCGGCACGTGCGAGATCCGGACGAACTCGATCTGGCGCGGGATGAACAACAGCAGCGGATGCGATTCGACGAGCGACAACATCACCTGCTTCCCCTT CGGTGAGAAATCAGGCATCGCGGCGATGAACTATACAGAGGTTACGGATATCCCGTGCGCGTTTTTGTATTCGTCGATGGCGGTTGAGGTTACTCCGGGT CGGGTCAACGACTCGCTGGTGTCGCTGGAGCTCGAGAGGATGAAATTGGAGTCGTGGCTAAACGGAAATTGCGCTGTTAACGGGAGCACCTCGTGCTCCC GGCTTGCTCATTGTAAAAATGTTAGGCTTAGCCGTGGACAAGAAAGGAGGTTCGGGTTCCGGTGCCGGTCTAGGGAAGGATTGATCGGAGATGGTTACAG CGACGGCGGAGGTTGCCGGCAAGCTTCCAAATGCAACCCATCGAAGTACATGTCCGGCAACTGTGGAGGAACCACGAGAATCGGCGTTCTAATTGCAGGT CTAGTTGCAGGAGCTGCATTAATGGCGGGAGCAGCAATCCTCTGCTACTGCTTAACCCGCCGCTCAACTTCTCTACGACACCGATGGAGCGCAAGGCGGC TTCTCACAGAAGCCGCGGGAAACTCCAGCGTCCCGTTCTACGCCTACAAGGAGATCGAAAAGGCGACAAATGGATTCTCCGATAAGCAGCGGCTAGGAAC TGGAGCTTATGGAACTGTCTACTCGGGGAAACTCGACCACAACGAGGAATGCGTAGCTATCAAAAAGATCAGGCACAATGACACTGACAGCATCGATCAA GTAATGAACGAAATTAAACTTCTATCTTCTGTAAGCCACCCGAATCTCGTACGCCTATTGGGGTGCTGCATCGAAGAAGGCGAACAAATTCTCGTGTATG AGTTCATGCCTAATGGAACTCTGTGTCAGCACCTGCAAAGAGAGAACGGGAAGGAAATACTTCCGTGGCAAGTAAGGCTGACTGTTGCTTCCGAAACTGC TAACGCCATCGCTTACTTGCATTCGATGAACCCGCCGATCTACCACCGCGACATCAAATCCAGCAACATACTGTTAGACTACAATTTCAAGTCGAAAGTG GCTGATTTCGGCCTGTCGAGACTCGGGATGACTACTGAGTCATCCCATATCTCGACGGCCCCACAGGGTACTCCTGGGTATTTAGACCCTCAGTACCATC AGTATTTCCACCTCTCGGACAAGAGCGATGTCTACAGCTTCGGAGTTGTTCTGCTTGAGATCATAACGGGTTTGAAAGTCGTGGACTTCTCCCGCCCCCA CAGCGAAGTCAACTTGGCCGCACTTGCAGTGGACAGAATCGGGAGAGGCTGCGTGGACGAGGTGATCGATCCTTATCTCGAACCGGATAGGGACGCGTGG ACGTTGTCATCGATTCATAATGTCGCTGAGCTGGCGTTCAGGTGCCTTGCGTTCCACGGCGACATGAGGCCTACAATGACGGAAGTTGCGCAGGAGCTTG AGAATGTTAGGCTTAGCGGCTGGGTTCCTAATAACATGTTCATGGAATCGCCCAGTCGGTCCTCAATTTCGATGTCGGACGATGGTTCAGTCACGAAGGC GAGAAGCGTGGGGAGTCAGAGGTTGGTTGTTCTGGAGCGTTTGGGTTCGATGGAGGTAGTCAAGGAGAAAGATAGCTCCCCGGTTTCGGTGAGGGATCCT TGGTTTAGCGAGCAGAGCTCACCTTCGTCGAACAGTTTGCTAAGTAATGCAGTTTAG
AA sequence Show only first row Show all	>Lus10000741 pacid=23166259 polypeptide=Lus10000741 locus=Lus10000741.g ID=Lus10000741.BGIv1.0 annot-version=v1.0 MMIVPSKSQILPLLILAVSILNSPITTVLQAAAAELTICSQFCGAGGGRQRVPYPFGFSPGCPIQLNCTEPTGEIHIGEFRVQNFTSDGGIVIDLPGKCN RPKESLSSLFGPNFAPSRSTNLLLQNCSRENSSGGGTCEIRTNSIWRGMNNSSGCDSTSDNITCFPFGEKSGIAAMNYTEVTDIPCAFLYSSMAVEVTPG RVNDSLVSLELERMKLESWLNGNCAVNGSTSCSRLAHCKNVRLSRGQERRFGFRCRSREGLIGDGYSDGGGCRQASKCNPSKYMSGNCGGTTRIGVLIAG LVAGAALMAGAAILCYCLTRRSTSLRHRWSARRLLTEAAGNSSVPFYAYKEIEKATNGFSDKQRLGTGAYGTVYSGKLDHNEECVAIKKIRHNDTDSIDQ VMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEFMPNGTLCQHLQRENGKEILPWQVRLTVASETANAIAYLHSMNPPIYHRDIKSSNILLDYNFKSKV ADFGLSRLGMTTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLLEIITGLKVVDFSRPHSEVNLAALAVDRIGRGCVDEVIDPYLEPDRDAW TLSSIHNVAELAFRCLAFHGDMRPTMTEVAQELENVRLSGWVPNNMFMESPSRSSISMSDDGSVTKARSVGSQRLVVLERLGSMEVVKEKDSSPVSVRDP WFSEQSSPSSNSLLSNAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	0	1
AT2G23450			Protein kinase superfamily pro...		Lus10019657 [exp]	1.0	0.9427
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	1.7	0.8657
AT3G09830			Protein kinase superfamily pro...		Lus10026524 [exp]	2.0	0.8784
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	2.4	0.8387
					Lus10023285 [exp]	3.7	0.8290
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	6.3	0.8357
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	8.5	0.8165
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	10.6	0.8266
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	10.9	0.8380
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	11.5	0.8332

Compare expression of checked genes

Lus10000741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.