Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37090 105 / 2e-27 unknown protein AT2G23460 63 / 1e-10 ATXLG1, XLG1 extra-large G-protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019656 [exp] 305 / 6e-105 AT4G37090 116 / 7e-33 unknown protein Lus10019655 [exp] 104 / 1e-24 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10021013 [exp] 56 / 3e-09 AT4G34390 61 / 4e-11 extra-large GTP-binding protein 2 (.1) Lus10023838 [exp] 57 / 7e-09 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G034600 [exp] 177 / 4e-55 AT4G37090 106 / 4e-29 unknown protein Potri.007G035200 [exp] 74 / 2e-14 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 69 / 1e-12 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 56 / 2e-08 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 54 / 7e-08 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 42 / 0.0006 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000742 pacid=23166260 polypeptide=Lus10000742 locus=Lus10000742.g ID=Lus10000742.BGIv1.0 annot-version=v1.0 ATGTCGGCCAGAGACGAATCGGATTCCGACGCACCGGAGGAGTTCACCGCCGATCAGGGAATCGAATTAGATGCTGAGATAAGGAAGATTCAGAAGGAAA ACAAGTCAAGAATTACTCGTGAGGGTAAAGAACGGCGAAGGAAATGGGCAGAGAGGAAGACGCCACGATCATCCAAAAAGGAAGACAAAGAAGAAGCCAA CGAAGCTATCGAAACTGAAGAGGAAGATGAAGAGTCTGCAAGTGCCAAAGGGATGCTTCCTAACAACATTGTTCAACTACTAGCTGCTCGCGAGAAGAAA GTGTTCTCTGCAAAGTCAGATGATGATGATGAGAAGACTGGCTCAGGTGCAAACCTTCCCACAAGGAAGAAGAAGAAGGCGAGAGGCTCTGGGCCACATA CTGTTATTTTGAACGAGGTATCCCCGCCACCTTGTTTACAGAACGCGTTAGAGTTCTTGAAGGAGAACAAAATGCGGGTTGCGAGATCGTCAGCTGTTCT CAACAACTCCAACCAAGCTCTCCGCCTTATATCCGCTTCTGGCTTGTTGAGTAAGAATAATTTGAGCTTTGGTTTCAGTAACTTGGAGGCAGTTTCCTGG GAGCTCGATTTAGGGTTTCTGTGTAGTGATTTTGAGGGGTTTTCTGCTGAATTGGGGAAAGGGATTTTCGCCTTTTTCGGGTTTAATTTACCAATTATGC CACTGGAGGATGAAGATCGAGGTAGAGGAGGAGGAGGAGTTCAGTACTCTTTCGCTCTGGAGTACGACGGTCCACCGCTGCCGTACGATCTCCCGCAAGC TGTCCCGATCAATATCTGCGAAATCCCTGTTGCGGCCGTGGTGGTTTCTCAGGTCGCCGACGAGGACGAGCTATCGTTGCCGTTGGTCAAGCCGCTGTTG GCGTCTGGGGTAAGCGGCGACGATGAATCGTCCCCCGCGATCTATCGGTTCTGA
AA sequence Show only first row Show all	>Lus10000742 pacid=23166260 polypeptide=Lus10000742 locus=Lus10000742.g ID=Lus10000742.BGIv1.0 annot-version=v1.0 MSARDESDSDAPEEFTADQGIELDAEIRKIQKENKSRITREGKERRRKWAERKTPRSSKKEDKEEANEAIETEEEDEESASAKGMLPNNIVQLLAAREKK VFSAKSDDDDEKTGSGANLPTRKKKKARGSGPHTVILNEVSPPPCLQNALEFLKENKMRVARSSAVLNNSNQALRLISASGLLSKNNLSFGFSNLEAVSW ELDLGFLCSDFEGFSAELGKGIFAFFGFNLPIMPLEDEDRGRGGGGVQYSFALEYDGPPLPYDLPQAVPINICEIPVAAVVVSQVADEDELSLPLVKPLL ASGVSGDDESSPAIYRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37090			unknown protein		Lus10000742 [exp]	0	1
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	8.1	0.9062
AT4G35890			winged-helix DNA-binding trans...		Lus10025953 [exp]	8.4	0.8332
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10020766 [exp]	9.8	0.8243
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	10.4	0.8959
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10029989 [exp]	11.4	0.8796
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10000630 [exp]	12.5	0.8725
AT3G18800			unknown protein		Lus10033505 [exp]	13.8	0.8876
AT3G03590			SWIB/MDM2 domain superfamily p...		Lus10005667 [exp]	14.1	0.8800
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	16.7	0.9022
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10007343 [exp]	17.7	0.8584

Compare expression of checked genes

Lus10000742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.