Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23460 951 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT1G31930 663 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT4G34390 636 / 0 XLG2 extra-large GTP-binding protein 2 (.1) AT2G26300 163 / 1e-44 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT2G46380 62 / 7e-10 Protein of unknown function (DUF3133) (.1) AT3G61670 59 / 6e-09 Protein of unknown function (DUF3133) (.1) AT1G01440 51 / 2e-06 Protein of unknown function (DUF3133) (.1) AT4G01090 49 / 9e-06 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019655 [exp] 1258 / 0 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 731 / 0 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 729 / 0 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10010421 [exp] 637 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 631 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10003115 [exp] 147 / 3e-38 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10004784 [exp] 146 / 5e-38 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10001910 [exp] 58 / 2e-08 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1) Lus10005153 [exp] 57 / 4e-08 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G035200 [exp] 1064 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 1053 / 0 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 712 / 0 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 703 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 693 / 0 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 692 / 0 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 679 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 676 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.006G219500 [exp] 162 / 6e-44 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 150 / 2e-39 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00503 [flax] [poplar] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10000743 pacid=23166266 polypeptide=Lus10000743 locus=Lus10000743.g ID=Lus10000743.BGIv1.0 annot-version=v1.0 ATGGGATCAATGCCTGAAGGGAGGAAGTGTCTGAATTGTATAGGCTACCCTATCGATGAATCGAAGAGGGCGAATCTAGGGAAATGTTCGAGGGTGCTTA AGAGGTTGTTGAATGATTTGGAGGTGAGGCAGATAATGAAGGCCGAGAAATTCTGCGAGGCGAATCAGTTGCCTCCCGAGTATGTTTGTGTGAACGGAAT TCCCCTTTGTCACGAGGAGCTGGTCCTTTTGCAGAGTTGTGCTAACCCGCCGAAGAAGTTGAAACCTGGGAACTATTGGTACGATAAAGTGTCCGGTCTT TGGGGGAAGGATGGACAGAAGCCTTCTCAAATCGTGAGTGCTCATATGAATGTGGGGGGTCCTATTGATTCGAATGCCAGCAATGGAAACACACAGGTTT ACATAAATGGCAGGGAGATTACGAAAGTCGAGCTTAGAATGTTGCAGTTGGCAGGAGTTCAATGTGCCGGCAACCCACATTTTTGGGTGAACGACGATGG ATCGTACCAAGAAGAGGGACAAAAGAACACTAAAGGCTACATTTGGGGCAAAGGTGCAATGAAGCTTGTGTGCACATTCCTTTCACTGCCAGTTCCATCT AAGTCTTCTAGTGAATCTGAGGAGCAAGTGAACAGTCTACCTAGCAGAAGCATGCCAGATTATCTCGAACAAAGGACACTTCTGAAGATTCTTTTAGTTG GATATAATGGATCTGGGACAAGTACTATTTTTAAGCAGGCCAAAATTCTTTACCAACCAACCCCTTTTACCGAGGATGAGCGAGAAAATATTAAATTGAC TATCCAGAGCAATGTGTATGGCTATCTTGGTATTCTCTTGGAAGGGCGTGACCGGTTTGAAGAGGAAAGTTCAGCCAAGGGAAAGAAAGATCAAGCGTCT AACCAAACTGATCCCAGTGGCAGTGGCACTCGCAGTAGCTCCAAAACTGTGTACTCTATTGGGCCGAGGCTTAAAGCATTCTCAGACTGGCTTCTCAAGA CCATGGTGTCAGGAAATCTCGATGCTATTTTTCCTGCTGCGACTAGGGAATATGCACCATTAGTTGAAGAATTGTGGAAAGATGCTGCCATTCAAGCAAC ATACAGTCGGAAAAGCGAACTGGAAATGCTTCCCAGTGTTGCAAGCTATTTCCTAGAGAGGGCAGTTGAGATATTGGCACCAGATTATGAACCCTCTGAT TTGGATATCCTCTACGCCGAGGGTGTTACTTCATCGAATGGTGTGGCTTCTCTGGATTTCTCGTTTCCACAGTCATCATACGACGATAAGTTCGACCATG ATGAACAACACGATTCCCTTCTTAGATATCAACTGATCAGGCTACAACCACGAGGAATCGGTGAAAACTGCAAGTGGCTGGAGATGTTCGAAGACATCGG GATGGTCATTTTCTGCATCTCCTTGAGCGACTATGACCAGGTGGCAGTCGACGGCACTAACAAAATGATGCTAAGCCGGAAATTCTTCGAGACCATAGTG ACACATCCAACGTTTGAGCAGATGGACGTCCTCCTGATCCTGAACAAATTCGACACTTTTGAGGAGAAGATAGAACGAGTACCCTTGACAGAATGCGAAT GGTTCGACGATTTCCACCCTCTGGTGAGCCGGCATCGATCGAGCAGCAGTAGCAGGAGCATCAATCACAATCCTTCCTTAGGTCAGCTGGGTTTCCACTA CATCGCGGTCAAGTTCAAGCGACTCTACGCTTCACTCACCGGCCGGAAGCTGTTTGTCTCTATGGTCAAAGCGTTGGAACCGGACAGCGTTGACTCTTCG CTCAAGTATGCGAGGGAGATCATGAAGTGGGAAGAAGAGAGGCCGAACTTCAGTGTTAGTGAGTATTCAATTTACAGCACTGAAGCCAGCTCTTATTCGC CTTGA
AA sequence Show only first row Show all	>Lus10000743 pacid=23166266 polypeptide=Lus10000743 locus=Lus10000743.g ID=Lus10000743.BGIv1.0 annot-version=v1.0 MGSMPEGRKCLNCIGYPIDESKRANLGKCSRVLKRLLNDLEVRQIMKAEKFCEANQLPPEYVCVNGIPLCHEELVLLQSCANPPKKLKPGNYWYDKVSGL WGKDGQKPSQIVSAHMNVGGPIDSNASNGNTQVYINGREITKVELRMLQLAGVQCAGNPHFWVNDDGSYQEEGQKNTKGYIWGKGAMKLVCTFLSLPVPS KSSSESEEQVNSLPSRSMPDYLEQRTLLKILLVGYNGSGTSTIFKQAKILYQPTPFTEDERENIKLTIQSNVYGYLGILLEGRDRFEEESSAKGKKDQAS NQTDPSGSGTRSSSKTVYSIGPRLKAFSDWLLKTMVSGNLDAIFPAATREYAPLVEELWKDAAIQATYSRKSELEMLPSVASYFLERAVEILAPDYEPSD LDILYAEGVTSSNGVASLDFSFPQSSYDDKFDHDEQHDSLLRYQLIRLQPRGIGENCKWLEMFEDIGMVIFCISLSDYDQVAVDGTNKMMLSRKFFETIV THPTFEQMDVLLILNKFDTFEEKIERVPLTECEWFDDFHPLVSRHRSSSSSRSINHNPSLGQLGFHYIAVKFKRLYASLTGRKLFVSMVKALEPDSVDSS LKYAREIMKWEEERPNFSVSEYSIYSTEASSYSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	0	1
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	1.0	0.8151
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	4.0	0.7869
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	6.0	0.7779
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	6.7	0.7441
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	11.8	0.7677
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	13.0	0.7494
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	14.9	0.7536
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	18.2	0.7114
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	22.8	0.7472
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	24.4	0.6511

Compare expression of checked genes

Lus10000743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.