Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019654 [exp] 274 / 6e-85 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 174 / 1e-49 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011580 [exp] 144 / 3e-39 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1) Lus10018021 [exp] 103 / 4e-25 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10026149 [exp] 86 / 1e-20 ND 41 / 2e-04 Lus10015648 [exp] 79 / 1e-16 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024150 [exp] 78 / 3e-16 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10023051 [exp] 77 / 5e-16 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10042778 [exp] 75 / 4e-15 AT4G12010 185 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097100 [exp] 44 / 8e-05 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000744 pacid=23166258 polypeptide=Lus10000744 locus=Lus10000744.g ID=Lus10000744.BGIv1.0 annot-version=v1.0 ATGCCTTCGTCTATTTACCAGCTCGACAAGCTCTCTGTTCGGAATCTAAGTTTCTCAGAAAGCTTGGAGGAGATCCCGGATGGTCTTAATCAACTTGTCA AGCTATACCTGTTAGCTTTGAGGGGTTGTGCCAAATTAAAATCTTTGCCGCAACTTCTTCCGCCAGTGCTGCAGGTTTTTTCAGTAAGTGGGTGCAAGTC ATTAGAAGCTCTACCCAGCAACATTGGCGAGCTGAAATGGTCTTTTCTACGCTTCGAAAATTGCCTACAACTTGACAAACAGTCGGGGGATCAGATCGTG GCAGATTTCAATACTCGTGTTACGATGTCCCTGAGAGCTAAGGGTAGCGTTTTATGCTCGGGAAGCGAGCTTCCGGCATGGCGCAGCAACGACTTCTTGA ATTGCCAAATGGAGTTGCCTACTAAGCAGCTAAATCCAGTTAATGGAAGGTGTCCTGTTTTCTTCGGATGCACAGGGGTTGAGCTGAATATGGAATACAA TATTTTCGCAGCCAACAACACTACTGTTGCTAGTTTCTCGAGTCCAGTCATTCAGATCTGCGGTGGAAGTGTCGACTCCCCTTCTGATTATGTGTTTTTG TGGTTTGACAAGAAGTTATTAGGCGAACCCAAGAAAGCAATGGAAGAAGCTGAAGATGGAGTTGAAGAAGTGGATGAACAAGTAACTTGGTATGAGAAAT ATCCTGGGAAAAGCATTTAG
AA sequence Show only first row Show all	>Lus10000744 pacid=23166258 polypeptide=Lus10000744 locus=Lus10000744.g ID=Lus10000744.BGIv1.0 annot-version=v1.0 MPSSIYQLDKLSVRNLSFSESLEEIPDGLNQLVKLYLLALRGCAKLKSLPQLLPPVLQVFSVSGCKSLEALPSNIGELKWSFLRFENCLQLDKQSGDQIV ADFNTRVTMSLRAKGSVLCSGSELPAWRSNDFLNCQMELPTKQLNPVNGRCPVFFGCTGVELNMEYNIFAANNTTVASFSSPVIQICGGSVDSPSDYVFL WFDKKLLGEPKKAMEEAEDGVEEVDEQVTWYEKYPGKSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10000744 [exp]	0	1
AT4G30630			unknown protein		Lus10026889 [exp]	1.0	0.7285
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	10.6	0.6913
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	27.7	0.6593
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	31.4	0.6561
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10019257 [exp]	39.2	0.5418
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10025335 [exp]	41.3	0.6360
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10023832 [exp]	54.3	0.6094
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	62.6	0.6139
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	64.1	0.6021
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	72.7	0.5616

Compare expression of checked genes

Lus10000744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.