Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65220 162 / 3e-51 Ribosomal L29 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019653 [exp] 208 / 4e-68 AT5G65220 87 / 5e-21 Ribosomal L29 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093700 [exp] 197 / 3e-65 AT5G65220 166 / 6e-53 Ribosomal L29 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0346 [flax] [poplar] Ribo_L29 PF00831 [flax] [poplar] Ribosomal_L29 Ribosomal L29 protein
Representative CDS sequence Show only first row Show all	>Lus10000745 pacid=23166268 polypeptide=Lus10000745 locus=Lus10000745.g ID=Lus10000745.BGIv1.0 annot-version=v1.0 ATGTTGAGCTTGTCAATTGCTGCTGCTACTTCACTCCCCAAGCTCTCCCTCCCATTCCACACCCACAACAAATCCTCATTCGCCGGCGTCCAAATCCCCC AGAAATGCCGCCTCCTCCCAATTCGCAGGACGGCGGCGGCTTCGGTGGTAATGATGGCGAAGAAAGACGACGAGTTGAAGGAGATTAGGACGCTGACCAC CGAAGAGATCAACGAGCAGGTCGTGGACCTTAAAGGCGAGCTCTTCATGCTCCGCTTACAAAAGTCCGTCAGGAACGAGTTCAAGTCCAGCGAATTCCGC CGCATGCGTAAAAAGATCGCACGAATGCTGACGGTGAAACGGGAAAGGGAGATCGAAGAAGGTATCAACAAGAGGATATCGAGGAAGCTGGACCGGCAAT GGAAGAGAAGCATTGTGGTGAGACCGCCTCCTTCCTTGAAGAAGAAGGAGGAAGAGGCTGCAGCAGAAGCGGCCGCTGCTGCTGCGAAATCTGCTTGA
AA sequence Show only first row Show all	>Lus10000745 pacid=23166268 polypeptide=Lus10000745 locus=Lus10000745.g ID=Lus10000745.BGIv1.0 annot-version=v1.0 MLSLSIAAATSLPKLSLPFHTHNKSSFAGVQIPQKCRLLPIRRTAAASVVMMAKKDDELKEIRTLTTEEINEQVVDLKGELFMLRLQKSVRNEFKSSEFR RMRKKIARMLTVKREREIEEGINKRISRKLDRQWKRSIVVRPPPSLKKKEEEAAAEAAAAAAKSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	0	1
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	1.0	0.9897
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	1.4	0.9846
AT2G33450			Ribosomal L28 family (.1)		Lus10023747 [exp]	3.2	0.9752
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10033200 [exp]	3.5	0.9790
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10037372 [exp]	4.0	0.9737
AT2G42220			Rhodanese/Cell cycle control p...		Lus10023820 [exp]	4.0	0.9766
AT5G22340			unknown protein		Lus10043400 [exp]	4.6	0.9738
AT4G02725			unknown protein		Lus10014675 [exp]	6.0	0.9733
AT5G22340			unknown protein		Lus10034185 [exp]	7.1	0.9580
AT2G33450			Ribosomal L28 family (.1)		Lus10011792 [exp]	7.5	0.9673

Compare expression of checked genes

Lus10000745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.