Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 56 / 7e-10 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 54 / 2e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 53 / 2e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G26680 52 / 2e-08 B3 REM17 transcriptional factor B3 family protein (.1) AT4G33280 51 / 3e-08 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT5G60130 50 / 5e-08 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT4G00260 49 / 1e-07 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1) AT4G31610 49 / 2e-07 B3 REM1, ATREM1 REPRODUCTIVE MERISTEM 1, Transcriptional factor B3 family protein (.1) AT1G49475 46 / 8e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G24645 47 / 9e-07 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019652 [exp] 166 / 4e-54 AT3G18990 53 / 6e-09 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 70 / 3e-15 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014359 [exp] 69 / 6e-15 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 69 / 9e-15 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10039303 [exp] 69 / 3e-14 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 68 / 3e-14 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 67 / 8e-14 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 67 / 1e-13 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10008529 [exp] 66 / 1e-13 AT3G18990 87 / 8e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 86 / 3e-20 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 80 / 3e-19 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 65 / 1e-13 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 61 / 6e-12 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 58 / 1e-10 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 56 / 5e-10 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 52 / 1e-08 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G036800 [exp] 50 / 7e-08 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 48 / 3e-07 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 48 / 3e-07 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10000746 pacid=23166267 polypeptide=Lus10000746 locus=Lus10000746.g ID=Lus10000746.BGIv1.0 annot-version=v1.0 ATGAACAACAAGCCACATTTCTTCAGGGTCATGCTCCATTTCATGCTTCAAGATGGCATAATTTACATACCAACGGAGTTTGTGGAGAGACACAGGGAAA GACTAGTTGGAAAGTTTGCAACTTTGAAGGTTGCTAGTGGGGAAACATGGGAGGTTGAGTTAGTGAATGGTGGAGATGGGAAGATCTGGTTAGCAAATGG GTGGGGAAAGTTTGCAAAGCACCAATCTTTGAACCAAGGAGATGTTCTGGTTTTCGGGTTGGAGCAAGACTGCTACTTTCATGTCATGGTGTTTGATCCC AATACTGTCTCCGAAAGGATCAAGTGCAGCAGCCATGATCAGGTGGAAGTTGAGGAAGGATTTGTTGTTGGGAAGGTGACAGGTTTGTAA
AA sequence Show only first row Show all	>Lus10000746 pacid=23166267 polypeptide=Lus10000746 locus=Lus10000746.g ID=Lus10000746.BGIv1.0 annot-version=v1.0 MNNKPHFFRVMLHFMLQDGIIYIPTEFVERHRERLVGKFATLKVASGETWEVELVNGGDGKIWLANGWGKFAKHQSLNQGDVLVFGLEQDCYFHVMVFDP NTVSERIKCSSHDQVEVEEGFVVGKVTGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10000746 [exp]	0	1
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	3.2	0.7766
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	5.1	0.7628
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	6.7	0.7614
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	9.4	0.7353
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	14.0	0.7235
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	15.4	0.6448
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	18.4	0.6585
AT1G60590			Pectin lyase-like superfamily ...		Lus10029140 [exp]	23.2	0.6975
AT1G48120			hydrolases;protein serine/thre...		Lus10005957 [exp]	24.0	0.6616
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10009292 [exp]	24.9	0.5967

Compare expression of checked genes

Lus10000746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.