Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53310 57 / 4e-09 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT1G16640 52 / 3e-08 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 52 / 2e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 49 / 3e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 44 / 0.0001 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 42 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G06160 43 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT4G01580 42 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 42 / 0.0003 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000748 [exp] 276 / 4e-92 AT4G33280 54 / 3e-08 AP2/B3-like transcriptional factor family protein (.1) Lus10000750 [exp] 147 / 4e-42 AT4G01580 56 / 3e-09 AP2/B3-like transcriptional factor family protein (.1) Lus10019651 [exp] 67 / 3e-14 ND / Lus10016285 [exp] 55 / 6e-08 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 48 / 7e-06 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 47 / 7e-06 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 46 / 4e-05 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 45 / 7e-05 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 44 / 0.0002 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036800 [exp] 53 / 2e-07 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 47 / 1e-05 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 46 / 2e-05 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 45 / 7e-05 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10000747 pacid=23166264 polypeptide=Lus10000747 locus=Lus10000747.g ID=Lus10000747.BGIv1.0 annot-version=v1.0 ATGGAGAAGCAGCAGCTGCCTGAGACGCCGTCCTTCGTCAAGATCTTCCATGGAGGCTTCGCTAAAGAACTGGTAAGTGGTAACCAAACATTAAACTTTC CTCTACCTCCTTACAAAACCCATTTCCCCACTCTGTTTTTTAACCCACCTTCATTTTTCTTACAGAAAATTCCAGATCCATTCCTGAACCAACACGGCCA GATTCTCTCCTCAGAGAGCTCTGATCCCAGAAACGGAAACCCAGTTGTGGTTTCCGTAGAGAGGAAAATCCGAGACGAATGCTTCTTCACTCTCGGATGG GCTCATTTCGTCGAAGAAACCGGCATCATTATGCATATACATGTATTTAATTTCAGTAAGGACTTGGTTGTGATAAAGAAAGAAGAAACAATGGAGATCC ATGAGCATCCTTCCTTCGTCAAGGTCTTCCATGGAGGCTTAGCCAAAGAACTGAAGATTCCAGATCCATTCGTAAGCCAACACAGCCAGATTATCCCCAA GAAGCTAGCTCTCATGACAAGAAAAGGAAATCCAGTGGTGGTCTCCGTGGAGAGGAGAAGCAAAGGCCAATGCTTCTTCACTCTCGGCTGGACTCATTTC GTTGAAGAAAACAACCTCGAAGAAGGTGACATCATCTTCTTCTACTTCCATGGAGACAGAACTCTAAACGTCGTCGTTTATGACTTGCTTGGCTGCTTAA AGGGCGTGAAACTAACAGGGCATAGGTCTGCTGAGCCAAGAACAGTAGCGAAGAGGGTTAAAAGGGCTGCTACTGCTGCGAACGAGAAATTATTTGAGTT TAAAACGTTCTTCAAGTCCTACCAGAAGTATTACCAGTACATGCCGTTGGAGTTTGCTGAAACTGTGGGGCTAAAAGCGGGAGGAAACGCTCTGTTTAAA GACCCAAAGGGTAAAATATGGATCATCGGAGTTACCGACGGAGACACAACGGGTCGTCAGAAGCGGTTCGGTAGCAGCTGGAACGAGTTCGTGAGGAAGA ATGGGATTGAAGATGGAGATAAGCTGAGTTTCAGTTTCAAGCCTAGTCTGGGTTTCATCGAGGTGAAGATTTCGAAGGGAGTTATCCTGATTGATTGA
AA sequence Show only first row Show all	>Lus10000747 pacid=23166264 polypeptide=Lus10000747 locus=Lus10000747.g ID=Lus10000747.BGIv1.0 annot-version=v1.0 MEKQQLPETPSFVKIFHGGFAKELVSGNQTLNFPLPPYKTHFPTLFFNPPSFFLQKIPDPFLNQHGQILSSESSDPRNGNPVVVSVERKIRDECFFTLGW AHFVEETGIIMHIHVFNFSKDLVVIKKEETMEIHEHPSFVKVFHGGLAKELKIPDPFVSQHSQIIPKKLALMTRKGNPVVVSVERRSKGQCFFTLGWTHF VEENNLEEGDIIFFYFHGDRTLNVVVYDLLGCLKGVKLTGHRSAEPRTVAKRVKRAATAANEKLFEFKTFFKSYQKYYQYMPLEFAETVGLKAGGNALFK DPKGKIWIIGVTDGDTTGRQKRFGSSWNEFVRKNGIEDGDKLSFSFKPSLGFIEVKISKGVILID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Lus10000747 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	2.2	0.9922
AT5G36000			unknown protein		Lus10004013 [exp]	2.8	0.9914
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	3.9	0.9911
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	4.5	0.9909
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	5.5	0.9831
					Lus10000586 [exp]	5.9	0.9765
AT3G52610			unknown protein		Lus10014215 [exp]	7.3	0.9773
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	8.8	0.9681
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	9.5	0.9693
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	10.2	0.9704

Compare expression of checked genes

Lus10000747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.