Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 53 / 3e-08 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 53 / 4e-08 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT1G16640 46 / 2e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 46 / 8e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G06220 41 / 0.0002 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 41 / 0.0003 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31615 41 / 0.0006 B3 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000747 [exp] 288 / 5e-97 AT3G53310 57 / 6e-09 AP2/B3-like transcriptional factor family protein (.1) Lus10000750 [exp] 135 / 1e-38 AT4G01580 56 / 3e-09 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 49 / 1e-06 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10025669 [exp] 46 / 1e-05 AT3G18990 100 / 1e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 45 / 2e-05 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 44 / 4e-05 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 44 / 4e-05 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10019651 [exp] 41 / 4e-05 ND / Lus10039303 [exp] 44 / 7e-05 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036800 [exp] 49 / 1e-06 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 49 / 1e-06 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 45 / 3e-05 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.015G016000 [exp] 41 / 0.0001 AT4G01500 47 / 6e-07 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 42 / 0.0002 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 40 / 0.0008 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10000748 pacid=23166262 polypeptide=Lus10000748 locus=Lus10000748.g ID=Lus10000748.BGIv1.0 annot-version=v1.0 ATGGAGAAAGATGAACAGCCGTCCTTCGTCAAGATCTTCCATGGAGGCTTAGCCAAAGAACTGAAGATTCCAGATCCATTCATGGACCAACACAGCCAGA TTCTCCCCGACAAGCTAGCTCTCATACTCAGAAACGGAAACCCAGTGGTGGTCTCTGTGGAGAGGAGAAGCAAAGGCCAATGCTTCTTCACTCTCGGCTG GACTCATTTCGTTGAAGAAAACAACCTTGAAGATGATGACATCGTCTTCTTCTATTTCCACGGGGTTAGAACTGTGAAAATCGTCGTTTACGACTTGCTT GGCTGCTTAAAGGGTGTGAAACTAACATACCAGGGTTCTGCTGAGCCAATAAACGTAGGCACGAGGAGGTATAATCGGGCTGATTCCAAAGAGAGAGAAA AATGGTTCGAAGTGATAATCAAGCCGCACAGTCGGCGTCAAATGAGAATCCCAGCGGTGTTTTCCGACAGTGCGGGGCTAAAGGTCGGGGGAAACGCTGT GCTTGAAGACCCAAACGGGAAAGTGTGGTCTATTGTAGTTGGCGCAACAGGCGTAAAGTGTCGTCAAAATCAGTTGAGCATCGGCTGGAGTGAGTTTATC AGGGAGAATGAGGTCGAAGATGGAGATAAATTGAGTTTTTTCTTGAAGTCTAATTTGATCCAGGTGAAGATTCAAAAGGAGGGAGTTGTTGTGATTGATT GA
AA sequence Show only first row Show all	>Lus10000748 pacid=23166262 polypeptide=Lus10000748 locus=Lus10000748.g ID=Lus10000748.BGIv1.0 annot-version=v1.0 MEKDEQPSFVKIFHGGLAKELKIPDPFMDQHSQILPDKLALILRNGNPVVVSVERRSKGQCFFTLGWTHFVEENNLEDDDIVFFYFHGVRTVKIVVYDLL GCLKGVKLTYQGSAEPINVGTRRYNRADSKEREKWFEVIIKPHSRRQMRIPAVFSDSAGLKVGGNAVLEDPNGKVWSIVVGATGVKCRQNQLSIGWSEFI RENEVEDGDKLSFFLKSNLIQVKIQKEGVVVID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005663 [exp]	1.7	0.7573
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10014750 [exp]	4.2	0.6602
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	8.2	0.7406
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Lus10012961 [exp]	8.4	0.6655
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	20.0	0.7255
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10029149 [exp]	22.5	0.7082
AT2G33580			Protein kinase superfamily pro...		Lus10042225 [exp]	23.2	0.7226
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10025817 [exp]	25.5	0.6781
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10027874 [exp]	29.4	0.6725
AT3G12620			Protein phosphatase 2C family ...		Lus10023470 [exp]	31.2	0.7022

Compare expression of checked genes

Lus10000748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.