Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01580 49 / 5e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 47 / 3e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31615 44 / 4e-05 B3 Transcriptional factor B3 family protein (.1) AT1G49475 41 / 0.0003 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G16640 40 / 0.0003 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G24690 41 / 0.0006 B3 REM11 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000747 [exp] 141 / 9e-40 AT3G53310 57 / 6e-09 AP2/B3-like transcriptional factor family protein (.1) Lus10000748 [exp] 124 / 1e-34 AT4G33280 54 / 3e-08 AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 42 / 0.0003 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10012038 [exp] 41 / 0.0004 AT3G18990 67 / 5e-12 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 40 / 0.0008 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036900 [exp] 52 / 2e-07 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 45 / 2e-05 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 44 / 8e-05 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 42 / 0.0003 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10000750 pacid=23166257 polypeptide=Lus10000750 locus=Lus10000750.g ID=Lus10000750.BGIv1.0 annot-version=v1.0 ATGAAGAAGCAGCAGCAGCCTCAGACCCCATCCTTTCTCAAGCTCTACACCGGAGAATGCGACGAAAAAGTCAAGATTCCGGATTCATTCATGGCCCAAC ACGGCGAGAATCTCTCCGGAAAGCTGGTTCTCATGTCCACCTACGGAGATCCCGTGGTGGTCTCCGTCGAAAGGAGCAGTGTCGGGGGTCGACAATGGTT CTTCTTCAAGCACGGCTGGAGCAATTTCGTCGAGGAAAACGGTGTCGAAGAACATGACTCTCTTGTTTTCCACTTCACTGGGGACAGGGCTGCCAACGTC GTCGTTTACGACTCCTCTGGCTGCGTAAAGGGTCTGACAGTAAAGAAGCAGCAAGCTGGTTCTTTAACAAAGAAGAGTTTCGGAATGGGGATGATGATGA AGAAACAGAGCATGCCTCTGTTCCAAGAAAAGTACATTCCGATGGAGTTTCATGATGCAACTGAGCTATCCCAGGGCGACAAAGTTCAGCTTGAAGACCC AAGTGGGGAAGTTTGGTCTGTGTCGGTTATCGCAGGAGACCGACGGGGTCGTCAACTGCGGCTGGCGGGCGGTTGGCCCGATTTCGTCGCTGCAAATCGG TTGGAAATTGGAGATGGGTTGGAGTTCTGTTTCAAGGCCGAGGGTTTGATTCAGGTTAAGATTGACAGGAAGAAGAAGAAGAAGAAGGTGATAGCGAGTG ATGTCAAGAAAGAAGAAGAACAAGGGATGGTGTGCATTGGGAGAGGGTTGACTGATTGA
AA sequence Show only first row Show all	>Lus10000750 pacid=23166257 polypeptide=Lus10000750 locus=Lus10000750.g ID=Lus10000750.BGIv1.0 annot-version=v1.0 MKKQQQPQTPSFLKLYTGECDEKVKIPDSFMAQHGENLSGKLVLMSTYGDPVVVSVERSSVGGRQWFFFKHGWSNFVEENGVEEHDSLVFHFTGDRAANV VVYDSSGCVKGLTVKKQQAGSLTKKSFGMGMMMKKQSMPLFQEKYIPMEFHDATELSQGDKVQLEDPSGEVWSVSVIAGDRRGRQLRLAGGWPDFVAANR LEIGDGLEFCFKAEGLIQVKIDRKKKKKKVIASDVKKEEEQGMVCIGRGLTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10000750 [exp]	0	1
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10022233 [exp]	7.3	0.8610
AT2G22660			Protein of unknown function (d...		Lus10004273 [exp]	8.1	0.8923
AT4G02715			unknown protein		Lus10042605 [exp]	10.4	0.8226
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	13.7	0.8778
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	22.6	0.8693
AT5G41620			unknown protein		Lus10028746 [exp]	27.7	0.7586
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	28.1	0.8647
					Lus10003428 [exp]	29.4	0.8369
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	33.6	0.8616
AT5G13250			RING finger protein (.1)		Lus10002575 [exp]	37.9	0.8487

Compare expression of checked genes

Lus10000750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.