Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37100 1092 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 1090 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 1032 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G51920 285 / 7e-86 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 210 / 1e-58 unknown protein AT1G16540 72 / 1e-12 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019650 [exp] 1683 / 0 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 1286 / 0 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 1285 / 0 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 260 / 2e-76 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 257 / 5e-75 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 250 / 7e-72 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 216 / 1e-59 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016752 [exp] 81 / 9e-16 AT2G23520 96 / 5e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022447 [exp] 80 / 9e-16 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036100 [exp] 1287 / 0 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 1270 / 0 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 298 / 6e-90 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G120500 [exp] 278 / 1e-82 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 278 / 2e-82 AT4G22980 431 / 2e-144 unknown protein Potri.015G097000 [exp] 81 / 4e-16 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 80 / 1e-15 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 76 / 3e-14 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G066400 [exp] 71 / 4e-12 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.001G056400 [exp] 45 / 4e-05 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000751 pacid=23166265 polypeptide=Lus10000751 locus=Lus10000751.g ID=Lus10000751.BGIv1.0 annot-version=v1.0 ATGCATCTTTCGCTGTGGAAGCCGATTTCACACTGTGCAGCGCTACTATTAGACAAGAAGAGCAGGAGGAAACATGGGGCAGAAGAGGAATCCGATCTGG AAATCAGTAAAAATCCGTCACTTCTCAGGAAAATCCAAGAGAAAAAGCTTAGAGAAGCTTTGGAGGAAGCTTCAGAAGATGGATCACTGTCCAAATCCAA AGACATTGATGAATCAGAGTTAGCAAACAACCAAGAGGAAGAAACCCTAGGTCGGTCGAGGTCGTTGGCGAGGCTTCACGCACAGAGAGAGTTCCTCAGG GCTACATCAATGGCTGCAGACCGAGTATTCGAGAGCTCGGAATCGATCCCTGAGCTGAACGAATCGTTCTCCAAGTTCTTAACCATGTACCCCAAGTATG AGTCTTCTGAGAAAGTTGATCAGTTGAGATCAGATGAGTACAGTCATCTGTCTCCACCCAAGGTATGTCTCGATTACTGCGGGTTCGGGTTGTTCTCTTA TCTTCAGACATTGCATTACTGGGAAACCTCGACTTTTAGCTTATCCGAGATCACTGCGAATTTCAGCAATCATGCTCTCTATGGTGGTGCTGAAAAGGGC ACATTGGAACATGATATCAAGACTAGGATAATGGATTACTTGAACATACCTGAGAATGAGTATGGACTTGTGTTTACTGTTAGTAGAGGTTCTGCATTTA AGTTGCTAGCCGAATCGTATCCTTTCCACACGAATAAGAAGCTGTTGACCATGTTTGATTACGAGAGCCAGTCTGTGAATTGGATGGCTCAGAGTGCCAA GGAGAAAGGTGCTGAGGTCCACAGTGCTTGGTTCAAGTGGCCTACTCTTAAGCCTTGTTCGACCGACTTGAGGAAGCGAATTACAGACAAGAAAAGGCGT CGTAAGAAGGATTCTGCTACCGGTTTGTTTGTGTTTCCGGTGCAGTCGAGGGTTACCGGTGCTAAGTATTCATACCAATGGATGGCATTGGCTCAGCAGA ACAATTGGCATGTGTTGCTTGATGCGGGGTCTTTAGGTCCTAAAGACATGGATTCACTTGGTTTATCGTTGTTTCGTCCTGATTTCATAGTCACGTCATT CTATAGGGTGTTTGGGTTCGATCCTACTGGGTTTGGATGTCTTCTTATTAAGAAATCGGTCATGGGATGCCTTCAGCATCAGTCGGGAAGTACAGGGTCC GGTATAGTGAAGATAACTCCGGAGTATCCTCTCTATTTAAGCGATTCGGTAGATGGTCTGGATGGCTTGGTAGGAAACGAAAATGATTACGAAGAAGCTG TTGGAAAAGACGAAAATGCCGCTACTGAATCGCGTCCAGGAGGAATGCAGATGCCTGCATTCTCGGGGGCATATACGTCCGCTCAAGTGAGGGATGTTTT CGAGACTGAGATGGAGCACGACAACAGTTCGGATAGAGATGGAACGAGCACGATATTTGAAGAGGCTGAGAGTGTCTCGGTTGGAGAAGTGATAAAAAGT CCCGTCTTTAGTGAAGATGGTTCTTCGGACAATTCGTTTTGGATCGATTTGGGGCAGTCTCCATTAGGGTCTGATTATGGAGGCAAGCATAAATCAGCCT CTCCACTGCCTCCTTTCTGGTTCTCCGGCAAGAAGGCTAATAATCAAAAGAAGCTCTCATCGCCTAAACCCATTTCGAAGATCTATAGCAGTCCATTGTA TGATGATCACAAAGTAGTGATGAACTCACATGATGATCATCAACATGTGTTGTCATTTGATGCTGCAGTTTTATCAGTTTCTCATGAACTGGACCGGGTT AAAGAGGTTCCTGAAGAAGAGCAGTATGCTAACGGTTCGAATCATACCTATGTTTCCGAGATTGAAGAAGAATCGAGTAATGGCTTCCAACACAATGGCT CGGAAGATAAGAAGGAGAGCGCGATAAGAAGAGAAACAGAAGGAGAGTTTCGGTTGTTGGGGAGAAGGGAAGGGAGTAGATTTGCAGGTGGTGGTAGAGA TAACGATGATGAGTACGCGAGCGATGGCGAGTTTGGAGACGGGTTGCAAGAGTTGGACAGTAGGAGAGAGCCTGAGATCATTTGCCGCCATTTGGATCAT GTGAATATGTTGGGGCTCAACAAAACGACTCTGAGGCTTCGGTTTCTGATCAACTGGCTAGTGACCTCGTTGCTGCAGCTGAGATTACCGAATGTTGATG GTGAGGAAGGAGGAGGAGCGCATCTCGTCCATATCTATGGACCGAAGATAAAGTACGAGAGAGGTGCTGCTGTGGCGTTCAATGTTCGAGACAGAAACCG TGGTGGTGGTGGCATTGTGAGCCCTGAAGCTGTTCAAAGGCTAGCTGAAAAGGAAGGTATATCTCTTGGCATTGGCTTTCTCAGTCACATAAGAATTGTC GATACCCCACCTGGGGCGCTGCAAAATGGTGGTCATCAGATGATCAATGGGAAAACCGGTTTCGTTAGAGTTGAAGTTGTCACAGCTTCACTCGGGTTTC TGACCAACTTTGAAGATGTTTACAAGCTGTGGGCTTTTGTTTCCAAGTTCCTCAATCCTGCATTTACAAGAGAAGATAGCCTCCCCACAGTGGAAGAAGG CGACGAAACTTGA
AA sequence Show only first row Show all	>Lus10000751 pacid=23166265 polypeptide=Lus10000751 locus=Lus10000751.g ID=Lus10000751.BGIv1.0 annot-version=v1.0 MHLSLWKPISHCAALLLDKKSRRKHGAEEESDLEISKNPSLLRKIQEKKLREALEEASEDGSLSKSKDIDESELANNQEEETLGRSRSLARLHAQREFLR ATSMAADRVFESSESIPELNESFSKFLTMYPKYESSEKVDQLRSDEYSHLSPPKVCLDYCGFGLFSYLQTLHYWETSTFSLSEITANFSNHALYGGAEKG TLEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAEVHSAWFKWPTLKPCSTDLRKRITDKKRR RKKDSATGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIVTSFYRVFGFDPTGFGCLLIKKSVMGCLQHQSGSTGS GIVKITPEYPLYLSDSVDGLDGLVGNENDYEEAVGKDENAATESRPGGMQMPAFSGAYTSAQVRDVFETEMEHDNSSDRDGTSTIFEEAESVSVGEVIKS PVFSEDGSSDNSFWIDLGQSPLGSDYGGKHKSASPLPPFWFSGKKANNQKKLSSPKPISKIYSSPLYDDHKVVMNSHDDHQHVLSFDAAVLSVSHELDRV KEVPEEEQYANGSNHTYVSEIEEESSNGFQHNGSEDKKESAIRRETEGEFRLLGRREGSRFAGGGRDNDDEYASDGEFGDGLQELDSRREPEIICRHLDH VNMLGLNKTTLRLRFLINWLVTSLLQLRLPNVDGEEGGGAHLVHIYGPKIKYERGAAVAFNVRDRNRGGGGIVSPEAVQRLAEKEGISLGIGFLSHIRIV DTPPGALQNGGHQMINGKTGFVRVEVVTASLGFLTNFEDVYKLWAFVSKFLNPAFTREDSLPTVEEGDET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10000751 [exp]	0	1
AT1G12530			unknown protein		Lus10007047 [exp]	3.2	0.8162
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10039811 [exp]	5.2	0.8439
AT2G40980			Protein kinase superfamily pro...		Lus10031009 [exp]	5.7	0.8316
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	5.7	0.8269
AT5G57710			Double Clp-N motif-containing ...		Lus10015511 [exp]	10.1	0.7514
AT1G79090			unknown protein		Lus10031210 [exp]	11.7	0.8295
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10031053 [exp]	13.4	0.7986
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	18.0	0.7937
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	18.7	0.8084
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	21.9	0.7908

Compare expression of checked genes

Lus10000751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.