Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04780 791 / 0 Ankyrin repeat family protein (.1) AT3G24210 696 / 0 Ankyrin repeat family protein (.1) AT3G24200 644 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT3G04470 605 / 0 Ankyrin repeat family protein (.1) AT1G62050 358 / 3e-110 Ankyrin repeat family protein (.1) AT1G11740 347 / 7e-106 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011743 [exp] 1099 / 0 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10011742 [exp] 1054 / 0 AT3G24200 653 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10008195 [exp] 605 / 0 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 570 / 0 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10002942 [exp] 439 / 6e-141 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 381 / 1e-118 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10027961 [exp] 337 / 2e-107 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10003524 [exp] 311 / 5e-95 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1) Lus10027960 [exp] 239 / 1e-69 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051400 [exp] 962 / 0 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 941 / 0 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051200 [exp] 746 / 0 AT3G24200 663 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Potri.019G019700 [exp] 617 / 0 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 607 / 0 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 348 / 8e-107 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 340 / 1e-103 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1) Potri.007G044300 [exp] 44 / 0.0007 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [flax] [poplar] GPCR_chapero_1 GPCR-chaperone CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10000752 pacid=23148779 polypeptide=Lus10000752 locus=Lus10000752.g ID=Lus10000752.BGIv1.0 annot-version=v1.0 ATGGCGGGTATTGATGTTTCGAAGTATGCACATAGTCCCGTGCACAAGGCTATTGCAGCGAGGGATTATGCTGATCTTAAGAAGATATTAGCAGGGTTGC CACGGCTTTGCAACCCAGCTGACATTCGGACCGAGTCAACTTCAATGGCTGAAGAAGAGAAGGCTGAAGCCATCTCTGCTGTTATTGATCGGCGTGATGT CCCAAACCGCGAGACCCCTCTTCATTTGGCTGTCAAATTGGGCGACAAGACTGCAGCAGAGATGCTCATGGTTGCTGGTGCAGATTGGAGCTTACAAAAT GAGCATGGTTGGAGTGCTCTTCAAGAAGCAATTTGTAACAAAGAAGAAGCCATTGCGATGACAATTGTTAGGCACTACCAGCCATTGGCTTGGGCCAAAT GGTGTCGGAGGTTGCCTCGTTTGATTGGGACCATGCATCGGATGAGGGACTTCTATATGGAGATCACATTCCACTTTGAGAGTTCTGTGATTCCTTTTAT CTCAAGGATTGCTCCTTCAGACACTTACAAGATTTTGAAGAGGGGTGCAAACTTGAGAGCAGATATGACCTTGGCAGGTTTCGATGGTTTAAGAATTCAG CGTTCTGATCAAAGTATCCTTTTCCTTGGGGATGGATCTGAGGATGGGAAAGTGCCTCATGGCACACTTTGTATGATCACACATAAAGACAAAGAAGTGA TGAATGCTCTAGATGGTGCTGCTTCTCCTGCAACTGACGAAGAGGTTAAACAAGAAGTGAATGTTATGTCTCAAACAAATATTTTTCGTCCAGGAATCGA TGTAACTCAAGCAGTGCTTTTGCCACAGCTAACTTGGAGGAGGCAGGAGAAAACAGAAATGATCGGTGAATGGAAAGGTAAAGTTTATGATATGCATAAT GTGGTTATTAGCATCAAGTCGAGGAAGGTTCCGGGGGCAATGTCAGATGATGAGTTCTTTTCGTCTAGCAATGAGAATGAAACAGAAAGTGAGGAGGAGC TTATTGATGGTAATTTGACAGAAGAAGAAAGAAACCAACTTGAACTTGCACTTAAATTGGATTCTTCAGAAATGACCCATGAGAATGGTGAACATAGAGA TATCCCTATTGAGGATGGTGATGAGTTTAGAAATGGAGAAACTAAGCATGAGAAGAAAGGTTGGTTCGGGGGATGGAGGAAACGTGATGAGAAGGGTGAA GTGCATAAGAAAATAGTTCCACCTAGAAGTTCTCTGTGTGTGGAAGACAAGGTAAGCGACCTTTTGGGGGACTCTCCATCTGATGGACAGCCCAGACCAG CAAGACATTCTGTGGAAGTAATTGTTAGAGATGAACACCAAAAAGGAAGAGAACCGAAGACTTCTACTTCAACTAGTGCTGGTCATCGGCGCAAGGAAGT AGGTCGTGAAAACGAGTATAAGAAAGGTTTAAGGCCAACACTGTGGCTGTCTCCGAACTTCCCATTGAAAACTGATGAAATTCTCCCATTGCTTGACATC CTTGCAAACAAAGTTAAAGCAATTCGCCGATTACGAGATCTACTAACCACAAAACTTCCTCTGGGAACCTTTCCGGTCAAGGTTGCAATACCAGTCATTC CTACAGTTAGAGTAGTTATTACATTTACAAAGTTTGAAGAGCTAGAGCCGTTGGATGAATTTGCTACTCCACCATCAAGCCCGACACCAGGAGGCAGAGA GAGCCATGCAGGGATACAACCACCCGCAAGTACGTCTTCGTGGTTTCAGTGGATTAAGGCGCCATACCAACAAAGTAACTCGTCAAATGGTTATTCTAAC GGTAGGCTAGAGACCCTCCAAGACCCATTTGCCATCCCCTCAAATTACACTTGGATACATGGAACTAGTAGTTTGGGTTGGGTCGAATCACCAACCTTAG CCCAGACCAGGCTTCTTCTTCAACCGACTGTTGCTCGCAGCTACTTGCCGGAACTTCCTCCCTACTCTGTACCACCGCCTGCATCTTCCTCTTCCCTCAC GCTCCTCTCCTTCCCTGCTTTTAGAGCTTCAACAATGAACAGACTGGTTGCTAGGAAGCTTTATTCCAATGGAAATTATCTCAAGGTTACGTCGAGGAAA GGCTTCTGTAGCGGTGGCGAAGCTACAGTAGTATCAAGTGCATCCACAGGCCAGCTTAACCATCTACAGGAGTGCGAGAATCTCAGTGGAAATGATCAAC CTTATGACATTGCTATTGTTGGGGGAGGCATGGTTGGAATGGCCCTAGCTTGTTCCTTAGCAACAAAGCCACTGACGAAGCACCTGAATGTTGCTATAAT TGATAGCAATCCTGCTTTGGCGAAGAAGCTAAGCATTAAAAGGGAGGATCCGCCTGATGCCAGGGTCAGCACGGTGACACCAGCAACCATATCTTCATTC GAAGATGCCGGAGCTTGGCAGTACGTTCAACAACATCGCCATGCATATTTTGATAAGATGCAGGTCTGGGATTACACCGGCTTAGGATATACAAAGTATG ATGCCAGAGACGTAAACAAAGATGTTTTAGGGTGTGTAGTAGAAAATCGAGTGCTCCATAGTTCTTTGTTATCACGTCTTGAGGATACAGGTTTTCGGAA GACAATCTACCCTTCAAAATTGGCTTCAATGATTCGATATCCAAGTTCTACCATGAAGGTAGATGACAACACTAAGGAGGCATCGTACATGAAAGCAGGC TTGGTGAAGCTAGAAATGAGTGATGGCAGCAACCTGTTCACGAAACTGGTGGTTGGATCTGATGGGTCCAAGTCGCAAGTAAGGAACCTAGCTGGATTTA AAACAACTGGGTGGCACTACTCACAGAATGCCATCATCTGTACTGTGGAACATTCAGCTGAAAATCACACTGCCTGGCAACGGTTTTTACCTGATGGTCC AATTGCACTTTTGCCCATAGGGGATAATTTTAGCAATATTGTTTGGACCATGAACCCGAAGCAGTCATCAGATTTGACAGTAATGAATGAGGATGATTTT GTGAAAGCTGTAAATAATGCTCTGGACCATGGATATGGCCCTCGTCCAAAGTCGAGCTTCCCGAATGGTAGCGACAGGTTTTCGCTATTTGGAGGCAACT TAACCATGTCTACCAATGAATCCTTTGAGGTACCACCAAAGGTGGTAAAGCTTGCTTCGAAGAGAACGGCGTTTCCCCTGTCCTTAATGCATGCTAACGA CTATGTAGCGAAACGTATTGTACTTCTTGGTGATGCTGCACACGCTGTTCATCCTCTAGCAGGTCAAGGAGTTAATTTGGGTTTCGGAGATGCATTTGCT CTCTCAAGAATCATCAGCGAGGGCATTGCAGTTGGAGTGGACATTGGGGAGGTGTCCCTGTTGAGAAAGTACGAAAGAGAAAGGAAACCAGCAAACGTAG CGATGATGGCCGTACTGGATGGTTTTCAGAAGCTATACTCCGTGGATTTTGGGCCTCTTAATGTGTTACGTGCCGCTGCCTTCAATGCGGCAAATAACTT TTCACCGCTGAAGAGGAGTATCATCTCGTATGCCTCCGGAGAACAGCGTCTGCCCATTTTCTCTTGA
AA sequence Show only first row Show all	>Lus10000752 pacid=23148779 polypeptide=Lus10000752 locus=Lus10000752.g ID=Lus10000752.BGIv1.0 annot-version=v1.0 MAGIDVSKYAHSPVHKAIAARDYADLKKILAGLPRLCNPADIRTESTSMAEEEKAEAISAVIDRRDVPNRETPLHLAVKLGDKTAAEMLMVAGADWSLQN EHGWSALQEAICNKEEAIAMTIVRHYQPLAWAKWCRRLPRLIGTMHRMRDFYMEITFHFESSVIPFISRIAPSDTYKILKRGANLRADMTLAGFDGLRIQ RSDQSILFLGDGSEDGKVPHGTLCMITHKDKEVMNALDGAASPATDEEVKQEVNVMSQTNIFRPGIDVTQAVLLPQLTWRRQEKTEMIGEWKGKVYDMHN VVISIKSRKVPGAMSDDEFFSSSNENETESEEELIDGNLTEEERNQLELALKLDSSEMTHENGEHRDIPIEDGDEFRNGETKHEKKGWFGGWRKRDEKGE VHKKIVPPRSSLCVEDKVSDLLGDSPSDGQPRPARHSVEVIVRDEHQKGREPKTSTSTSAGHRRKEVGRENEYKKGLRPTLWLSPNFPLKTDEILPLLDI LANKVKAIRRLRDLLTTKLPLGTFPVKVAIPVIPTVRVVITFTKFEELEPLDEFATPPSSPTPGGRESHAGIQPPASTSSWFQWIKAPYQQSNSSNGYSN GRLETLQDPFAIPSNYTWIHGTSSLGWVESPTLAQTRLLLQPTVARSYLPELPPYSVPPPASSSSLTLLSFPAFRASTMNRLVARKLYSNGNYLKVTSRK GFCSGGEATVVSSASTGQLNHLQECENLSGNDQPYDIAIVGGGMVGMALACSLATKPLTKHLNVAIIDSNPALAKKLSIKREDPPDARVSTVTPATISSF EDAGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYDARDVNKDVLGCVVENRVLHSSLLSRLEDTGFRKTIYPSKLASMIRYPSSTMKVDDNTKEASYMKAG LVKLEMSDGSNLFTKLVVGSDGSKSQVRNLAGFKTTGWHYSQNAIICTVEHSAENHTAWQRFLPDGPIALLPIGDNFSNIVWTMNPKQSSDLTVMNEDDF VKAVNNALDHGYGPRPKSSFPNGSDRFSLFGGNLTMSTNESFEVPPKVVKLASKRTAFPLSLMHANDYVAKRIVLLGDAAHAVHPLAGQGVNLGFGDAFA LSRIISEGIAVGVDIGEVSLLRKYERERKPANVAMMAVLDGFQKLYSVDFGPLNVLRAAAFNAANNFSPLKRSIISYASGEQRLPIFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04780			Ankyrin repeat family protein ...		Lus10000752 [exp]	0	1
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	1.4	0.9447
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	2.0	0.9275
AT5G63040			unknown protein		Lus10027687 [exp]	7.7	0.8849
AT5G18420			unknown protein		Lus10008554 [exp]	11.7	0.9068
AT1G15860			Domain of unknown function (DU...		Lus10019598 [exp]	14.0	0.8781
AT1G47290		AT3BETAHSD/D1	3beta-hydroxysteroid-dehydroge...		Lus10000358 [exp]	14.1	0.8621
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	15.8	0.8740
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10019905 [exp]	16.1	0.9071
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	19.0	0.8762
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	22.4	0.8950

Compare expression of checked genes

Lus10000752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.