Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04770 385 / 4e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 363 / 1e-126 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51280 274 / 7e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 231 / 6e-73 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 206 / 7e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 114 / 4e-30 unknown protein AT1G49940 55 / 9e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011738 [exp] 579 / 0 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 379 / 7e-133 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 380 / 2e-126 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10028434 [exp] 270 / 5e-88 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 271 / 6e-88 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 271 / 7e-88 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 270 / 1e-87 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 244 / 1e-76 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008852 [exp] 231 / 1e-71 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177600 [exp] 450 / 4e-161 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 437 / 7e-156 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 394 / 6e-139 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 279 / 4e-91 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 274 / 5e-89 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 270 / 2e-85 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 268 / 2e-84 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 56 / 7e-10 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10000753 pacid=23148782 polypeptide=Lus10000753 locus=Lus10000753.g ID=Lus10000753.BGIv1.0 annot-version=v1.0 ATGCAAGAGACGACGAGTCAACAAAGGATATCAGAGAGGATTCAGAACTTTGATGTCGTGGCTGCTCCGTATCACGTCCTTCACAAGCTTCCTCCTGGCG ATGGCCCTTACGTTAGAGCTAAGCACGTTCAGCTAGTTGAGAAAGATCCAGTGGGAGCAGTAGAATGGTTCCTGAAAGCAATCAATTCGGGAGATAGAGT AGATAGTGCCCTCAAGGACATGGCGCTAGTGATGAAACAACAAGACAGATCCGAAGAAGCAATTGAAGCTATCAGGCGTTTTAGACATCTCTGCTCCAAG CAAGCTCAAGAGTCGCTCGACAATGTCCTCATTGACCTTTACAAGAAATGTGGGAAAATGGAGGAGCAGATAGAGTTATTGAAGCAGAAGCTTTGGATGA TTTACCAAGGAGATGCGTTCAATGGCAAGCCAACTAAGACTGCACGATCTCACGGCAGGAAGTTTCAGGTCACTGTCCAGCAAGAGACTTCTCGGATATT GGGGAACTTGGGTTGGGCATACATGCAGCTAGGCAACTATTCGGCGGCCGAAACAGTATACGTCAAAGCACAGCTAATTGACCCAGATGCCAACAAGGCC TGCAACTTATCCATGTGCCTTTTGAAGCAAATGCGATACGATGAAGCACGTTCTGTATTGGATGATGTGGTCAAAGGCAAGATTTTGGGATACGACGACC CCAAGTCGAGGAATCGGATCAAGGAGCTACTTGAAGAACTGGAGATGCGCCAATCCTCTCGTGGACAATCCTCCTCTTCAGTTACATTAAGTTTGGAAGA CGCATTCGCTGAGGGACTAGACCAGCTTATGGGACAACTGACCCCGTATCGATCTAGGAGGCTTCCGATTTTCGAAGAGATCTCTCCTGTGAGAGACCAG TTAGCTTGTTGA
AA sequence Show only first row Show all	>Lus10000753 pacid=23148782 polypeptide=Lus10000753 locus=Lus10000753.g ID=Lus10000753.BGIv1.0 annot-version=v1.0 MQETTSQQRISERIQNFDVVAAPYHVLHKLPPGDGPYVRAKHVQLVEKDPVGAVEWFLKAINSGDRVDSALKDMALVMKQQDRSEEAIEAIRRFRHLCSK QAQESLDNVLIDLYKKCGKMEEQIELLKQKLWMIYQGDAFNGKPTKTARSHGRKFQVTVQQETSRILGNLGWAYMQLGNYSAAETVYVKAQLIDPDANKA CNLSMCLLKQMRYDEARSVLDDVVKGKILGYDDPKSRNRIKELLEELEMRQSSRGQSSSSVTLSLEDAFAEGLDQLMGQLTPYRSRRLPIFEEISPVRDQ LAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10000753 [exp]	0	1
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	1.4	0.9128
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Lus10015560 [exp]	2.0	0.9020
AT5G24660		LSU2	response to low sulfur 2 (.1)		Lus10032912 [exp]	5.8	0.7929
AT5G57710			Double Clp-N motif-containing ...		Lus10023201 [exp]	10.9	0.8079
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10011738 [exp]	21.1	0.7558
AT5G24660		LSU2	response to low sulfur 2 (.1)		Lus10015594 [exp]	22.0	0.7417
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	29.2	0.8000
AT3G15760			unknown protein		Lus10043269 [exp]	29.5	0.7756
AT4G02920			unknown protein		Lus10027996 [exp]	36.0	0.7828
AT2G19130			S-locus lectin protein kinase ...		Lus10024343 [exp]	38.7	0.7432

Compare expression of checked genes

Lus10000753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.